General information for g14139.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lysophosphatidylcholine acyltransferase.
Parent gene
- The parent gene g14139 is located on chr_1: 34863760..34864661 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14139 | g14139.t2 | isoform | g14139.t2 | 34859209 | 34860996 |
| chr_1 | g14139 | g14139.t2 | exon | g14139.t2.exon1 | 34859209 | 34860099 |
| chr_1 | g14139 | g14139.t2 | TTS | g14139.t2 | 34859249 | 34859249 |
| chr_1 | g14139 | g14139.t2 | cds | g14139.t2.CDS1 | 34859869 | 34860099 |
| chr_1 | g14139 | g14139.t2 | exon | g14139.t2.exon2 | 34860168 | 34860423 |
| chr_1 | g14139 | g14139.t2 | cds | g14139.t2.CDS2 | 34860168 | 34860423 |
| chr_1 | g14139 | g14139.t2 | exon | g14139.t2.exon3 | 34860477 | 34860602 |
| chr_1 | g14139 | g14139.t2 | cds | g14139.t2.CDS3 | 34860477 | 34860602 |
| chr_1 | g14139 | g14139.t2 | exon | g14139.t2.exon4 | 34860673 | 34860996 |
| chr_1 | g14139 | g14139.t2 | cds | g14139.t2.CDS4 | 34860673 | 34860809 |
| chr_1 | g14139 | g14139.t2 | TSS | g14139.t2 | NA | NA |
Sequences
>g14139.t2 Gene=g14139 Length=1597
ACGTGTGAAATCAAAAGAAGATTGGCCGAGTCTTATAATATTTCCAGAAGGAACTTGCAC
AAATAGGACGAGTCTCATTAAATTTAAGCTTGGTGCATTCTATCCTGGACAACCCGTTCA
ACCAATTTTAATTCGATATCCGAACAAAATTGACACATTTACTTGGACTTGGAAAGGGCC
TCATGTTATGTTATTGATATGGAGAACTTTGGCTCAATTTCACACATTTGTGGAAATTGA
ATATTTACCCGTTTATACCCCGAGTGAAGAAGAGAAACAAAATCCAAAACTGTTTGCTCA
AAATGTACAAAATTTAATGTCGAAAGCATTAAATATTCCTATATCGGACTATACATTCGA
CGATTGTAAGCTAATGGAATACGCTCAAAAATGCAAATTACAGTTTGCTGAAAAAGTCTC
TGATATGTTGAGACTTCGTGAGAAAATTGGACTTGCACAATCTCAAATTGAGGAGTACAT
TGTAAAGGAAAATTTCAAAGGAAATGAAGATTATTATTTTGAATTCAGTGAATTTGTACA
TCGTTTAAAAATTCCAGCAGACAACATTTCATTTACATTGTTTAAGCTATTTATTAGTGA
AAGTGATATTGCTGATGTGATTGACTTCAAGGAGTATTTATTGCACGCTATATTTTTGAT
CAAAAACTCTGAGCCTAAAATTGAGTTGCTAAGAATGATGTTTATGTTATATGGTGAAGA
TGGTCGAGTGAATCGAGAGCCATTTATAAAAATTATGCAGCACTTTTCATCAGTGAGTCT
AAAAGAGCTCACAAAATTATTTTATTCATTGGATACAAGGAATTTAGGATCAATAGCTTT
CTATCAATTTGTTGAAGCAACTCAAAATAATTCAAAATTTACCCAATTATATACACCAAA
TCGCAACTTCCGTCAGAAAAATAAGGATCCTCGTTAAATATATACCTAAATATTTTAGTA
AACTTATATACCTAATAGTTTCATCACAATAATCACATTTTAATCGAATTAACCAGAATT
TCAACTATTTTATTGAGAAATGGTTTTTGAACTCATTAGAAAATTTTTCTTCTGCCCATG
TATGTGTATAAAAAATAAATTTTCATAATTATCAATTTACTTACAATCATTTGAAATGAA
ATAATATTGAATTACCTCATTTGCACAAATGGAAAAAAATAGTAATGATTATATACAAAA
TTAATCAATACGATAAATATCAAGAGTTTATATAATCCACTAATGGCATAGAAGAATGCT
CATAAATTTTTTTTTTGAATCTTTATTAAAGTTGTAAGACATCACACATTTTATTTTTGT
ACTTACCAAAACTTTTACTTTTTGAAGATATTTATTGAATAGAAAAATTATAATGAGATA
ATGATATACAATGTATTAGAAGAAAATTTAATGTTAACATTGATCGTAAATATGATATAT
TTTTATGGCAAAAGGCTTTGATGCTAGTTTTATTTTATTTTATTTTTTTTTTGATGATGA
GTATGTTAGAAAAATGTTAATAGAATAAAAGAAACAAATTTGTATCCATAAAAATAATGA
TGAATTTTATTAATAAAATTATGGTTTACAGTACAAT
>g14139.t2 Gene=g14139 Length=249
MLLIWRTLAQFHTFVEIEYLPVYTPSEEEKQNPKLFAQNVQNLMSKALNIPISDYTFDDC
KLMEYAQKCKLQFAEKVSDMLRLREKIGLAQSQIEEYIVKENFKGNEDYYFEFSEFVHRL
KIPADNISFTLFKLFISESDIADVIDFKEYLLHAIFLIKNSEPKIELLRMMFMLYGEDGR
VNREPFIKIMQHFSSVSLKELTKLFYSLDTRNLGSIAFYQFVEATQNNSKFTQLYTPNRN
FRQKNKDPR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14139.t2 | Gene3D | G3DSA:1.10.238.10 | - | 60 | 236 | 1.7e-06 |
| 1 | g14139.t2 | PANTHER | PTHR23063 | PHOSPHOLIPID ACYLTRANSFERASE | 4 | 240 | 0.0e+00 |
| 2 | g14139.t2 | PANTHER | PTHR23063:SF21 | LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 2 | 4 | 240 | 0.0e+00 |
| 3 | g14139.t2 | SUPERFAMILY | SSF47473 | EF-hand | 103 | 226 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
