General information for g14143.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Beta-1,4-glucuronyltransferase 1.
Parent gene
- The parent gene g14143 is located on chr_1: 34898200..34899598 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14143 | g14143.t1 | isoform | g14143.t1 | 34898200 | 34899598 |
| chr_1 | g14143 | g14143.t1 | exon | g14143.t1.exon1 | 34898200 | 34898390 |
| chr_1 | g14143 | g14143.t1 | cds | g14143.t1.CDS1 | 34898200 | 34898390 |
| chr_1 | g14143 | g14143.t1 | exon | g14143.t1.exon2 | 34898447 | 34899031 |
| chr_1 | g14143 | g14143.t1 | cds | g14143.t1.CDS2 | 34898447 | 34899031 |
| chr_1 | g14143 | g14143.t1 | exon | g14143.t1.exon3 | 34899091 | 34899598 |
| chr_1 | g14143 | g14143.t1 | cds | g14143.t1.CDS3 | 34899091 | 34899598 |
| chr_1 | g14143 | g14143.t1 | TTS | g14143.t1 | 34899643 | 34899643 |
| chr_1 | g14143 | g14143.t1 | TSS | g14143.t1 | NA | NA |
Sequences
>g14143.t1 Gene=g14143 Length=1284
ATGTTTAGAAATCGACGAATTGAGAAATTATTAAAGATTTTGATAATTTTTGTGTTTGCT
TTCTTTGTGATATTAATATGTATGTTGAGACAACAATCAGATACAGAAAATGATAATACA
ATAGAGAGAATTCCTCGACAAAATGAGTCAGAAGTTGAAACTGCTTTATCGACAGCTAGC
AAAAGCTTGAAAAAATTAATAAAATGCAAGAACAAAATTCAAAAAGCTGAAAATATTTCA
TCAGGAAAATTTTTTATTTTTAAAAATTACAAAATTGCATCGAAACATTTTGATTGTTAT
GATTCAATCACTTATGTCACACATTCAGATTTTACATTCTTAAATAATGTTGTTCCACTA
CTGCAAAAATGGAATGGTCCATTAAGTTTGGCTATTTATGCACCAGGAAGTGATTTTACT
GCTGCACTTGAAGGAATTTTTTATCTTCAAAATTGTCATAAAAGGAGTTATCTAGTCAAA
AAATTTACAACATTTCATTTATTTTTCGATGAATCGCTTCTAAATGTGAGTCAAATAAAT
CACATGCCAATGAAATGCTCAGAGAGCAAAAAATATTTGGAAATCTCACAACGACAAACA
TTCAGAACAAAAAATAAATTAAGTTATCCAATTAACACAGCAAGAAATTTAGCAAGGTCT
GCATCAATAACTCATTTTGTGCTAGTCAGTGATATAGAACTTTATCCCAATCCACAATTC
ATAAATGAATTTCTAGAAATGATTTTTAATAATGAAAATTTGATAAATCATAAGAATGTT
TTTGTTTTGCCAGTTTTTGAAATTGTTCAAAATCAAGAGCTTCCAAATACCAAATATGAA
CTTCAACAACTTTACCTGGACAATAAAATACATTGGTTTCATAAACAAATTTGTCTTTCT
TGCCATTTGATTCCTTTTCACGAACTCTGGTTAATTCATACAAAACAACAAATGCAAATT
CATTCGAGTGTAAAAAGACAAGCACCGTTCAGTAATTGGGAGCCAATTTTTGTTGGAACA
AATGCTGATCCATGGTATGACGAACGTTTAAGTTGGGAAGGAAAGAGTGACAAAATGACA
CAAGCTTACATCATGTGCGTACTCGACTACAATTTCAATGTTCTCTCAAATGGTTTTTTG
ATTCATAAACCAGGAATTAAGACAGTTGCAGAATCGGCAAGGCCTGAATTAGAAGATTTA
AATCATAAAATTATTAAAGAGATAATTTTACCTGAGATAAGATTTTTGTATGGAGAAAAT
GAAAATTGCGAAATGTATACATGA
>g14143.t1 Gene=g14143 Length=427
MFRNRRIEKLLKILIIFVFAFFVILICMLRQQSDTENDNTIERIPRQNESEVETALSTAS
KSLKKLIKCKNKIQKAENISSGKFFIFKNYKIASKHFDCYDSITYVTHSDFTFLNNVVPL
LQKWNGPLSLAIYAPGSDFTAALEGIFYLQNCHKRSYLVKKFTTFHLFFDESLLNVSQIN
HMPMKCSESKKYLEISQRQTFRTKNKLSYPINTARNLARSASITHFVLVSDIELYPNPQF
INEFLEMIFNNENLINHKNVFVLPVFEIVQNQELPNTKYELQQLYLDNKIHWFHKQICLS
CHLIPFHELWLIHTKQQMQIHSSVKRQAPFSNWEPIFVGTNADPWYDERLSWEGKSDKMT
QAYIMCVLDYNFNVLSNGFLIHKPGIKTVAESARPELEDLNHKIIKEIILPEIRFLYGEN
ENCEMYT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14143.t1 | PANTHER | PTHR47412 | FI01434P-RELATED | 12 | 424 | 1.0E-138 |
| 1 | g14143.t1 | Pfam | PF13896 | Glycosyl-transferase for dystroglycan | 102 | 418 | 8.2E-94 |
| 4 | g14143.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 6 | g14143.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 31 | - |
| 5 | g14143.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 32 | 427 | - |
| 3 | g14143.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 32 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K21032 (beta-1,4-glucuronyltransferase 1 [EC:2.4.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed