General information for g14220.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Alanine aminotransferase 2.
Parent gene
- The parent gene g14220 is located on chr_1: 35504062..35505665 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14220 | g14220.t1 | isoform | g14220.t1 | 35501677 | 35504288 |
| chr_1 | g14220 | g14220.t1 | exon | g14220.t1.exon1 | 35501677 | 35501791 |
| chr_1 | g14220 | g14220.t1 | cds | g14220.t1.CDS1 | 35501677 | 35501791 |
| chr_1 | g14220 | g14220.t1 | exon | g14220.t1.exon2 | 35501851 | 35501867 |
| chr_1 | g14220 | g14220.t1 | cds | g14220.t1.CDS2 | 35501851 | 35501867 |
| chr_1 | g14220 | g14220.t1 | exon | g14220.t1.exon3 | 35504055 | 35504288 |
| chr_1 | g14220 | g14220.t1 | cds | g14220.t1.CDS3 | 35504055 | 35504288 |
| chr_1 | g14220 | g14220.t1 | TTS | g14220.t1 | 35505011 | 35505011 |
| chr_1 | g14220 | g14220.t1 | TSS | g14220.t1 | NA | NA |
Sequences
>g14220.t1 Gene=g14220 Length=366
ATGAAAGAAAAGGAGAAGTGCTTTCAGTCACTTAAAGAGCGTGCATTGTTGGTTGTTTCA
ACTTTTAATTCAATTGAGGGCTTAAGTTGTAACCCCGCACAAGGCGCAATGTATTGCTTT
GTTTCCATTGATTTGCCACCAAAAGCCATCGAGGCTGCCAAAAAAGCTAACCAAACACCA
GACACATTTTACGCTTTTCAACTGCTCGAGCAGACTGGAATTTGTGTAGTTCCTGGAAGC
GGTTTCGGCCAACAGCCTGGCACTTATCATTTTAGAACAACAATTCTTCCTCAAATGGAT
AAACTAAAGCATATGTTAGAACTGTTCCGTAAATTCCAAGAAAAGTTCCTCACTGAATAC
AAGTAG
>g14220.t1 Gene=g14220 Length=121
MKEKEKCFQSLKERALLVVSTFNSIEGLSCNPAQGAMYCFVSIDLPPKAIEAAKKANQTP
DTFYAFQLLEQTGICVVPGSGFGQQPGTYHFRTTILPQMDKLKHMLELFRKFQEKFLTEY
K
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14220.t1 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 1 | 121 | 0.0e+00 |
| 2 | g14220.t1 | PANTHER | PTHR11751 | ALANINE AMINOTRANSFERASE | 2 | 121 | 0.0e+00 |
| 3 | g14220.t1 | PANTHER | PTHR11751:SF29 | AT04676P | 2 | 121 | 0.0e+00 |
| 1 | g14220.t1 | Pfam | PF00155 | Aminotransferase class I and II | 8 | 101 | 3.2e-06 |
| 4 | g14220.t1 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 5 | 115 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
