General information for g14251.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family D member.
Parent gene
- The parent gene g14251 is located on chr_1: 35856487..35857276 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14251 | g14251.t5 | isoform | g14251.t5 | 35856487 | 35857276 |
| chr_1 | g14251 | g14251.t5 | exon | g14251.t5.exon1 | 35856487 | 35856724 |
| chr_1 | g14251 | g14251.t5 | cds | g14251.t5.CDS1 | 35856494 | 35856724 |
| chr_1 | g14251 | g14251.t5 | exon | g14251.t5.exon2 | 35856788 | 35857017 |
| chr_1 | g14251 | g14251.t5 | cds | g14251.t5.CDS2 | 35856788 | 35857017 |
| chr_1 | g14251 | g14251.t5 | exon | g14251.t5.exon3 | 35857072 | 35857276 |
| chr_1 | g14251 | g14251.t5 | cds | g14251.t5.CDS3 | 35857072 | 35857276 |
| chr_1 | g14251 | g14251.t5 | TTS | g14251.t5 | 35857466 | 35857466 |
| chr_1 | g14251 | g14251.t5 | TSS | g14251.t5 | NA | NA |
Sequences
>g14251.t5 Gene=g14251 Length=673
AGAAAATATGTCTATAACACTTAAAAATGTTCCAGTTGTGACTCCAAATTGCGATATTGT
TGTTCCAAATTTAACATTAACAATCAGACCTGGCATGCATTTACTTATAACTGGGCCAAA
TGGCTGTGGAAAATCGAGTTTATTCCGAATTTTAAGTGGTCTTTGGCCTATTTATAATGG
AGAGCTTCATTTGCCAAAAACATGTGAGGATAAACCATGCATGTTCTACATTCCACAACG
ACCATACATGTCGATTGGAAGTTTGAGAGAGCAAATCATTTATCCTGATTCATTAGATGA
CATGATAGCTAAAAATGTAACAGAAGAAAAGCTAAGGGAAATTTTAAAAATGGTTGCACT
TGAGCACATTGCTATTCGTGACAGTTTTGATGAAGTTCGTGATTGGAAAGATACTTTAAG
TGGCGGTGAAAAACAAAGAATGGCTATTGCAAGATTATTCTATCATAAACCACAATATGC
CCTCCTCGATGAGTGTACCAGTGCTGTTTCTATTGATGTTGAAAGCTCAATTTATGAAAC
AGCTAAAAATATGGGTATAACTTTGCTTACGATCACACATCGACCTACTCTTTGGAAATT
CCATACCAATATATTGAAATTTGATGGAATGGGAGGATGGATTTTTGAGCCATTGAATGA
AAATGAACATTAG
>g14251.t5 Gene=g14251 Length=221
MSITLKNVPVVTPNCDIVVPNLTLTIRPGMHLLITGPNGCGKSSLFRILSGLWPIYNGEL
HLPKTCEDKPCMFYIPQRPYMSIGSLREQIIYPDSLDDMIAKNVTEEKLREILKMVALEH
IAIRDSFDEVRDWKDTLSGGEKQRMAIARLFYHKPQYALLDECTSAVSIDVESSIYETAK
NMGITLLTITHRPTLWKFHTNILKFDGMGGWIFEPLNENEH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14251.t5 | CDD | cd03223 | ABCD_peroxisomal_ALDP | 3 | 211 | 7.09782E-91 |
| 5 | g14251.t5 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 214 | 6.0E-43 |
| 2 | g14251.t5 | PANTHER | PTHR11384 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER | 2 | 220 | 8.0E-110 |
| 3 | g14251.t5 | PANTHER | PTHR11384:SF13 | PEROXISOMAL MEMBRANE PROTEIN RELATED | 2 | 220 | 8.0E-110 |
| 1 | g14251.t5 | Pfam | PF00005 | ABC transporter | 21 | 165 | 2.9E-22 |
| 7 | g14251.t5 | ProSitePatterns | PS00211 | ABC transporters family signature. | 137 | 151 | - |
| 9 | g14251.t5 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 3 | 221 | 13.379 |
| 8 | g14251.t5 | SMART | SM00382 | AAA_5 | 28 | 206 | 1.0E-5 |
| 4 | g14251.t5 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3 | 206 | 5.42E-38 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
