General information for g14310.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, cytoplasmic A3a.
Parent gene
- The parent gene g14310 is located on chr_1: 36559621..36561070 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14310 | g14310.t12 | isoform | g14310.t12 | 36559508 | 36561020 |
| chr_1 | g14310 | g14310.t12 | exon | g14310.t12.exon1 | 36559508 | 36560759 |
| chr_1 | g14310 | g14310.t12 | TTS | g14310.t12 | 36559512 | 36559512 |
| chr_1 | g14310 | g14310.t12 | cds | g14310.t12.CDS1 | 36559621 | 36560751 |
| chr_1 | g14310 | g14310.t12 | exon | g14310.t12.exon2 | 36561010 | 36561020 |
| chr_1 | g14310 | g14310.t12 | TSS | g14310.t12 | 36561081 | 36561081 |
Sequences
>g14310.t12 Gene=g14310 Length=1263
ATCAGAATAAAAAATAAAAATGTGTGACGAAGAAGTTGCTGCATTGGTCGTTGACAATGG
ATCAGGAATGTGCAAAGCCGGTTTCGCTGGTGATGATGCACCACGTGCCGTTTTCCCATC
AATTGTCGGTCGTCCACGTCATCAAGGCGTTATGGTCGGTATGGGACAAAAGGACTCATA
TGTTGGTGATGAGGCTCAAAGCAAAAGAGGTATTCTTACCTTGAAATATCCAATTGAACA
CGGTATTGTTACAAACTGGGATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGA
ACTCCGTGTTGCTCCTGAAGAACATCCAGTCTTGCTTACCGAAGCTCCATTGAATCCAAA
AGCAAATCGTGAAAAGATGACACAAATTATGTTCGAGACATTCAACACACCAGCTATGTA
TGTCTCAATTCAAGCTGTCCTCTCATTGTATGCCTCAGGTCGTACAACTGGTATTGTTTT
GGATTCTGGTGATGGCGTTTCACACACAGTTCCAATTTACGAAGGTTATGCTTTGCCACA
TGCTATCCTTCGTCTTGATTTGGCCGGTCGTGATTTAACTGATTTCCTTATGAAAATCTT
AACCGAACGTGGTTATACTTTCACAACCACTGCCGAACGTGAAATTGTCCGTGATATCAA
AGAAAAATTGTGCTATGTTGCACTTGACTTTGAACAAGAAATGGCAACAGCTGCTTCATC
AAGCTCATTGGAGAAATCATATGAATTGCCTGATGGACAAGTCATCACAATCGGAAATGA
ACGATTCCGTTGTCCAGAAACTCTCTTCCAACCATCATACATTGGTATGGAATCAAATGG
AATTCACGAAACAACATACAATTCAATCATGAAGTGTGACGTTGATATCCGTAAAGACTT
GTATGCCAACACAGTCTTGTCAGGTGGCACAACAATGTTCCCAGGTATCGCTGATCGTAT
GCAAAAGGAAATTACAGCATTAGCTCCATCAACAATGAAGATCAAAATTATTGCACCACC
AGAACGTAAATACTCAGTCTGGATCGGAGGTTCAATTTTGGCATCGCTCTCAACCTTCCA
ACAAATGTGGATCAGCAAACAAGAATATGATGAATCAGGCCCATCAATTGTCCACAGAAA
ATGCTTCTAAATTTTGCCAACTAAAGATTTTTATTTTAAAATTTATTTTTCTAACTAAAG
ACTGCATGTTAAAACACTCTTTCGGTCTTTAATAAAGTACTTTATTAAAATGCTGATGTA
AAA
>g14310.t12 Gene=g14310 Length=376
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
TQIMFETFNTPAMYVSIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
LAGRDLTDFLMKILTERGYTFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS
YELPDGQVITIGNERFRCPETLFQPSYIGMESNGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
QEYDESGPSIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g14310.t12 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 182 | 5.81848E-20 |
| 14 | g14310.t12 | Gene3D | G3DSA:3.30.420.40 | - | 9 | 372 | 3.5E-192 |
| 13 | g14310.t12 | Gene3D | G3DSA:3.30.420.40 | - | 139 | 339 | 3.5E-192 |
| 12 | g14310.t12 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 181 | 273 | 3.5E-192 |
| 2 | g14310.t12 | PANTHER | PTHR11937 | ACTIN | 1 | 375 | 3.6E-253 |
| 3 | g14310.t12 | PANTHER | PTHR11937:SF359 | ACTIN | 1 | 375 | 3.6E-253 |
| 6 | g14310.t12 | PRINTS | PR00190 | Actin signature | 27 | 36 | 4.7E-58 |
| 8 | g14310.t12 | PRINTS | PR00190 | Actin signature | 50 | 61 | 4.7E-58 |
| 9 | g14310.t12 | PRINTS | PR00190 | Actin signature | 62 | 84 | 4.7E-58 |
| 5 | g14310.t12 | PRINTS | PR00190 | Actin signature | 116 | 129 | 4.7E-58 |
| 4 | g14310.t12 | PRINTS | PR00190 | Actin signature | 141 | 160 | 4.7E-58 |
| 7 | g14310.t12 | PRINTS | PR00190 | Actin signature | 237 | 253 | 4.7E-58 |
| 1 | g14310.t12 | Pfam | PF00022 | Actin | 4 | 376 | 3.8E-150 |
| 18 | g14310.t12 | ProSitePatterns | PS00406 | Actins signature 1. | 54 | 64 | - |
| 17 | g14310.t12 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 105 | 117 | - |
| 16 | g14310.t12 | ProSitePatterns | PS00432 | Actins signature 2. | 357 | 365 | - |
| 19 | g14310.t12 | SMART | SM00268 | actin_3 | 6 | 376 | 1.5E-241 |
| 11 | g14310.t12 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 5 | 154 | 1.5E-66 |
| 10 | g14310.t12 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 148 | 376 | 8.98E-100 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05692 (actin beta/gamma 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
