General information for g14310.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, cytoplasmic A3a.
Parent gene
- The parent gene g14310 is located on chr_1: 36559621..36561070 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14310 | g14310.t16 | TTS | g14310.t16 | 36559512 | 36559512 |
| chr_1 | g14310 | g14310.t16 | isoform | g14310.t16 | 36559621 | 36560751 |
| chr_1 | g14310 | g14310.t16 | exon | g14310.t16.exon1 | 36559621 | 36560211 |
| chr_1 | g14310 | g14310.t16 | cds | g14310.t16.CDS1 | 36559621 | 36560181 |
| chr_1 | g14310 | g14310.t16 | exon | g14310.t16.exon2 | 36560301 | 36560751 |
| chr_1 | g14310 | g14310.t16 | TSS | g14310.t16 | 36561081 | 36561081 |
Sequences
>g14310.t16 Gene=g14310 Length=1042
ATGTGTGACGAAGAAGTTGCTGCATTGGTCGTTGACAATGGATCAGGAATGTGCAAAGCC
GGTTTCGCTGGTGATGATGCACCACGTGCCGTTTTCCCATCAATTGTCGGTCGTCCACGT
CATCAAGGCGTTATGGTCGGTATGGGACAAAAGGACTCATATGTTGGTGATGAGGCTCAA
AGCAAAAGAGGTATTCTTACCTTGAAATATCCAATTGAACACGGTATTGTTACAAACTGG
GATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCTCCTGAA
GAACATCCAGTCTTGCTTACCGAAGCTCCATTGAATCCAAAAGCAAATCGTGAAAAGATG
ACACAAATTATGTTCGAGACATTCAACACACCAGCTATGTATGTCTCAATTCAAGCTGTC
CTCTCATTGTATGCCTCAGGTCGTACAACTGTTGGCCGGTCGTGATTTAACTGATTTCCT
TATGAAAATCTTAACCGAACGTGGTTATACTTTCACAACCACTGCCGAACGTGAAATTGT
CCGTGATATCAAAGAAAAATTGTGCTATGTTGCACTTGACTTTGAACAAGAAATGGCAAC
AGCTGCTTCATCAAGCTCATTGGAGAAATCATATGAATTGCCTGATGGACAAGTCATCAC
AATCGGAAATGAACGATTCCGTTGTCCAGAAACTCTCTTCCAACCATCATACATTGGTAT
GGAATCAAATGGAATTCACGAAACAACATACAATTCAATCATGAAGTGTGACGTTGATAT
CCGTAAAGACTTGTATGCCAACACAGTCTTGTCAGGTGGCACAACAATGTTCCCAGGTAT
CGCTGATCGTATGCAAAAGGAAATTACAGCATTAGCTCCATCAACAATGAAGATCAAAAT
TATTGCACCACCAGAACGTAAATACTCAGTCTGGATCGGAGGTTCAATTTTGGCATCGCT
CTCAACCTTCCAACAAATGTGGATCAGCAAACAAGAATATGATGAATCAGGCCCATCAAT
TGTCCACAGAAAATGCTTCTAA
>g14310.t16 Gene=g14310 Length=186
MKILTERGYTFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT
IGNERFRCPETLFQPSYIGMESNGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGI
ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI
VHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14310.t16 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 1 | 85 | 7.0E-44 |
| 8 | g14310.t16 | Gene3D | G3DSA:3.30.420.40 | - | 114 | 186 | 1.0E-19 |
| 2 | g14310.t16 | PANTHER | PTHR11937 | ACTIN | 1 | 185 | 5.8E-118 |
| 3 | g14310.t16 | PANTHER | PTHR11937:SF470 | ACTIN-2 | 1 | 185 | 5.8E-118 |
| 1 | g14310.t16 | Pfam | PF00022 | Actin | 6 | 186 | 1.2E-71 |
| 6 | g14310.t16 | ProSitePatterns | PS00432 | Actins signature 2. | 167 | 175 | - |
| 5 | g14310.t16 | SMART | SM00268 | actin_3 | 1 | 186 | 5.9E-26 |
| 4 | g14310.t16 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 1 | 186 | 6.85E-79 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed