General information for g14310.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, cytoplasmic A3a.
Parent gene
- The parent gene g14310 is located on chr_1: 36559621..36561070 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14310 | g14310.t17 | TTS | g14310.t17 | 36559512 | 36559512 |
| chr_1 | g14310 | g14310.t17 | isoform | g14310.t17 | 36559621 | 36561020 |
| chr_1 | g14310 | g14310.t17 | exon | g14310.t17.exon1 | 36559621 | 36560072 |
| chr_1 | g14310 | g14310.t17 | cds | g14310.t17.CDS1 | 36559621 | 36560072 |
| chr_1 | g14310 | g14310.t17 | exon | g14310.t17.exon2 | 36560202 | 36560759 |
| chr_1 | g14310 | g14310.t17 | cds | g14310.t17.CDS2 | 36560202 | 36560751 |
| chr_1 | g14310 | g14310.t17 | exon | g14310.t17.exon3 | 36560993 | 36561020 |
| chr_1 | g14310 | g14310.t17 | TSS | g14310.t17 | 36561081 | 36561081 |
Sequences
>g14310.t17 Gene=g14310 Length=1038
ATCAGAATAAAAAAAAATATATATTGAAAAATAAAAATGTGTGACGAAGAAGTTGCTGCA
TTGGTCGTTGACAATGGATCAGGAATGTGCAAAGCCGGTTTCGCTGGTGATGATGCACCA
CGTGCCGTTTTCCCATCAATTGTCGGTCGTCCACGTCATCAAGGCGTTATGGTCGGTATG
GGACAAAAGGACTCATATGTTGGTGATGAGGCTCAAAGCAAAAGAGGTATTCTTACCTTG
AAATATCCAATTGAACACGGTATTGTTACAAACTGGGATGATATGGAAAAGATCTGGCAT
CATACTTTCTACAATGAACTCCGTGTTGCTCCTGAAGAACATCCAGTCTTGCTTACCGAA
GCTCCATTGAATCCAAAAGCAAATCGTGAAAAGATGACACAAATTATGTTCGAGACATTC
AACACACCAGCTATGTATGTCTCAATTCAAGCTGTCCTCTCATTGTATGCCTCAGGTCGT
ACAACTGGTATTGTTTTGGATTCTGGTGATGGCGTTTCACACACAGTTCCAATTTACGAA
GGTTATGCTTTGCCACATGCTATCCTTCGTCTTGATTTGGCCGGTCAAATGGCAACAGCT
GCTTCATCAAGCTCATTGGAGAAATCATATGAATTGCCTGATGGACAAGTCATCACAATC
GGAAATGAACGATTCCGTTGTCCAGAAACTCTCTTCCAACCATCATACATTGGTATGGAA
TCAAATGGAATTCACGAAACAACATACAATTCAATCATGAAGTGTGACGTTGATATCCGT
AAAGACTTGTATGCCAACACAGTCTTGTCAGGTGGCACAACAATGTTCCCAGGTATCGCT
GATCGTATGCAAAAGGAAATTACAGCATTAGCTCCATCAACAATGAAGATCAAAATTATT
GCACCACCAGAACGTAAATACTCAGTCTGGATCGGAGGTTCAATTTTGGCATCGCTCTCA
ACCTTCCAACAAATGTGGATCAGCAAACAAGAATATGATGAATCAGGCCCATCAATTGTC
CACAGAAAATGCTTCTAA
>g14310.t17 Gene=g14310 Length=333
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
TQIMFETFNTPAMYVSIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
LAGQMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSYIGMESNGIHETTYNSI
MKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIG
GSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g14310.t17 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 207 | 1.10282E-20 |
| 13 | g14310.t17 | Gene3D | G3DSA:2.30.36.70 | Actin; Chain A | 35 | 72 | 4.9E-29 |
| 16 | g14310.t17 | Gene3D | G3DSA:3.30.420.40 | - | 154 | 197 | 1.9E-8 |
| 15 | g14310.t17 | Gene3D | G3DSA:3.30.420.40 | - | 198 | 293 | 1.5E-43 |
| 14 | g14310.t17 | Gene3D | G3DSA:3.30.420.40 | - | 294 | 331 | 4.3E-12 |
| 2 | g14310.t17 | PANTHER | PTHR11937:SF423 | CYTOPLASMATIC ACTIN | 1 | 184 | 4.9E-216 |
| 4 | g14310.t17 | PANTHER | PTHR11937 | ACTIN | 1 | 184 | 4.9E-216 |
| 3 | g14310.t17 | PANTHER | PTHR11937:SF423 | CYTOPLASMATIC ACTIN | 185 | 332 | 4.9E-216 |
| 5 | g14310.t17 | PANTHER | PTHR11937 | ACTIN | 185 | 332 | 4.9E-216 |
| 8 | g14310.t17 | PRINTS | PR00190 | Actin signature | 27 | 36 | 8.7E-47 |
| 9 | g14310.t17 | PRINTS | PR00190 | Actin signature | 50 | 61 | 8.7E-47 |
| 10 | g14310.t17 | PRINTS | PR00190 | Actin signature | 62 | 84 | 8.7E-47 |
| 7 | g14310.t17 | PRINTS | PR00190 | Actin signature | 116 | 129 | 8.7E-47 |
| 6 | g14310.t17 | PRINTS | PR00190 | Actin signature | 141 | 160 | 8.7E-47 |
| 1 | g14310.t17 | Pfam | PF00022 | Actin | 4 | 187 | 1.1E-70 |
| 20 | g14310.t17 | ProSitePatterns | PS00406 | Actins signature 1. | 54 | 64 | - |
| 19 | g14310.t17 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 105 | 117 | - |
| 18 | g14310.t17 | ProSitePatterns | PS00432 | Actins signature 2. | 314 | 322 | - |
| 21 | g14310.t17 | SMART | SM00268 | actin_3 | 6 | 333 | 4.0E-192 |
| 12 | g14310.t17 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 5 | 154 | 1.19E-66 |
| 11 | g14310.t17 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 147 | 333 | 1.3E-77 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
