General information for g14310.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, cytoplasmic A3a.
Parent gene
- The parent gene g14310 is located on chr_1: 36559621..36561070 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14310 | g14310.t20 | TTS | g14310.t20 | 36559512 | 36559512 |
| chr_1 | g14310 | g14310.t20 | isoform | g14310.t20 | 36559621 | 36561070 |
| chr_1 | g14310 | g14310.t20 | exon | g14310.t20.exon1 | 36559621 | 36560408 |
| chr_1 | g14310 | g14310.t20 | cds | g14310.t20.CDS1 | 36559621 | 36560408 |
| chr_1 | g14310 | g14310.t20 | exon | g14310.t20.exon2 | 36560466 | 36560759 |
| chr_1 | g14310 | g14310.t20 | cds | g14310.t20.CDS2 | 36560466 | 36560751 |
| chr_1 | g14310 | g14310.t20 | exon | g14310.t20.exon3 | 36560993 | 36561070 |
| chr_1 | g14310 | g14310.t20 | TSS | g14310.t20 | 36561081 | 36561081 |
Sequences
>g14310.t20 Gene=g14310 Length=1160
TCCATCGTTTTGTGACACTTTAGCTTTGGCAAAAAGTGCTTTGAGTTTTCATCAGAATAA
AAAAAAATATATATTGAAAAATAAAAATGTGTGACGAAGAAGTTGCTGCATTGGTCGTTG
ACAATGGATCAGGAATGTGCAAAGCCGGTTTCGCTGGTGATGATGCACCACGTGCCGTTT
TCCCATCAATTGTCGGTCGTCCACGTCATCAAGGCGTTATGGTCGGTATGGGACAAAAGG
ACTCATATGTTGGTGATGAGGCTCAAAGCAAAAGAGGTATTCTTACCTTGAAATATCCAA
TTGAACACGGTATTGTTACAAACTGGGATGATATGGAAAAGATCTGGCATCATACTTTCT
ACAATGAACTCCCAAATCGTGAAAAGATGACACAAATTATGTTCGAGACATTCAACACAC
CAGCTATGTATGTCTCAATTCAAGCTGTCCTCTCATTGTATGCCTCAGGTCGTACAACTG
GTATTGTTTTGGATTCTGGTGATGGCGTTTCACACACAGTTCCAATTTACGAAGGTTATG
CTTTGCCACATGCTATCCTTCGTCTTGATTTGGCCGGTCGTGATTTAACTGATTTCCTTA
TGAAAATCTTAACCGAACGTGGTTATACTTTCACAACCACTGCCGAACGTGAAATTGTCC
GTGATATCAAAGAAAAATTGTGCTATGTTGCACTTGACTTTGAACAAGAAATGGCAACAG
CTGCTTCATCAAGCTCATTGGAGAAATCATATGAATTGCCTGATGGACAAGTCATCACAA
TCGGAAATGAACGATTCCGTTGTCCAGAAACTCTCTTCCAACCATCATACATTGGTATGG
AATCAAATGGAATTCACGAAACAACATACAATTCAATCATGAAGTGTGACGTTGATATCC
GTAAAGACTTGTATGCCAACACAGTCTTGTCAGGTGGCACAACAATGTTCCCAGGTATCG
CTGATCGTATGCAAAAGGAAATTACAGCATTAGCTCCATCAACAATGAAGATCAAAATTA
TTGCACCACCAGAACGTAAATACTCAGTCTGGATCGGAGGTTCAATTTTGGCATCGCTCT
CAACCTTCCAACAAATGTGGATCAGCAAACAAGAATATGATGAATCAGGCCCATCAATTG
TCCACAGAAAATGCTTCTAA
>g14310.t20 Gene=g14310 Length=357
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELPNREKMTQIMFETFNTPAMYVSIQA
VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGY
TFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP
ETLFQPSYIGMESNGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEIT
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g14310.t20 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 163 | 3.85057E-11 |
| 13 | g14310.t20 | Gene3D | G3DSA:2.30.36.70 | Actin; Chain A | 35 | 72 | 5.5E-29 |
| 14 | g14310.t20 | Gene3D | G3DSA:3.30.420.520 | - | 95 | 131 | 5.2E-15 |
| 17 | g14310.t20 | Gene3D | G3DSA:3.30.420.40 | - | 132 | 300 | 1.6E-75 |
| 15 | g14310.t20 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 164 | 250 | 1.6E-75 |
| 16 | g14310.t20 | Gene3D | G3DSA:3.30.420.40 | - | 302 | 355 | 2.5E-16 |
| 4 | g14310.t20 | PANTHER | PTHR11937 | ACTIN | 1 | 95 | 1.3E-231 |
| 6 | g14310.t20 | PANTHER | PTHR11937:SF359 | ACTIN | 1 | 95 | 1.3E-231 |
| 3 | g14310.t20 | PANTHER | PTHR11937 | ACTIN | 97 | 356 | 1.3E-231 |
| 5 | g14310.t20 | PANTHER | PTHR11937:SF359 | ACTIN | 97 | 356 | 1.3E-231 |
| 7 | g14310.t20 | PRINTS | PR00190 | Actin signature | 27 | 36 | 1.5E-34 |
| 8 | g14310.t20 | PRINTS | PR00190 | Actin signature | 50 | 61 | 1.5E-34 |
| 9 | g14310.t20 | PRINTS | PR00190 | Actin signature | 62 | 84 | 1.5E-34 |
| 10 | g14310.t20 | PRINTS | PR00190 | Actin signature | 218 | 234 | 1.5E-34 |
| 1 | g14310.t20 | Pfam | PF00022 | Actin | 4 | 95 | 6.2E-29 |
| 2 | g14310.t20 | Pfam | PF00022 | Actin | 97 | 357 | 3.8E-104 |
| 20 | g14310.t20 | ProSitePatterns | PS00406 | Actins signature 1. | 54 | 64 | - |
| 19 | g14310.t20 | ProSitePatterns | PS00432 | Actins signature 2. | 338 | 346 | - |
| 21 | g14310.t20 | SMART | SM00268 | actin_3 | 6 | 357 | 4.0E-216 |
| 12 | g14310.t20 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 5 | 135 | 5.07E-53 |
| 11 | g14310.t20 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 129 | 357 | 7.68E-100 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed