General information for g14384.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14384 is located on chr_4: 198141..199420 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14384 | g14384.t2 | TSS | g14384.t2 | 197150 | 197150 |
| chr_4 | g14384 | g14384.t2 | isoform | g14384.t2 | 198141 | 199420 |
| chr_4 | g14384 | g14384.t2 | exon | g14384.t2.exon1 | 198141 | 199420 |
| chr_4 | g14384 | g14384.t2 | cds | g14384.t2.CDS1 | 198452 | 199420 |
| chr_4 | g14384 | g14384.t2 | TTS | g14384.t2 | NA | NA |
Sequences
>g14384.t2 Gene=g14384 Length=1280
ATCCATTAAAACAAATTCATTGTTGTGGAAGTGCAATAATTACTCCCTCAAAACAACCAG
TAACACCTTTCACACGTCACATTGCACCATTAACAATTTTCATCACTCAAGATGATCTTG
ATAATGCGAGAGAAAAATTATCTTCAATTGGTCGTATTGGTGATCTTCATGTAACAGCAA
CAAATGGAAGTGAAAAAGTAATTCTTGAATGGACTGGACCAGATACTGGTTTAGAAAATA
GCAAAGCTGAATTTGAAATTCGTTATGCACTATCACTTAAAGATATTGTTGATTCATTTG
ACAATATTGCTATGCCATGGCCACTTGCAGAAACTATTCCTCATTCAATTGGTCAAGGAG
CTTCTGTAACTCTCAATCTACTCAATGAACCTACACTCATTGGTGTACCTTTTTATGTTG
CAATTCGTTCAGCAAACACAATTTCAAATTATGCAAGAATTTTTGTACCAAAACGAAAGC
CTACAGCATCACCAACTTATACTCATATTGATAACGATATTTACGAGACTGATCCATCAA
TGGAACCAGCTGATGAGGACGATGGAATTTTCAAACATCATAATTTAGCTTCAATCCCTT
GGTCAATTATCATTCCAATAATTGTGTGCTGTCTTTTCATTCTTTTGGCTTTCATAATTT
ATTTCTGTTGTTGTCGAAGAAATTATAAACAACCGACTAAATCACCTGCAAAACCAGCAA
TTTCTGTTATCACACCAAGCACTCCTGTTCAACAAAATCAATATCATGTTGAACCAGGCT
ATCTTGTTGACGTTCCAGATCATCATACTGTAGGATTGCCAATGATTGACGATGAATTAA
TGAAGCCAGATTTTACTGATCATGATAAAATGTTGATTGAAGAAATGAAACAACAGCAAC
GTTTTCAACAAGCTTTTGATCAGCAGCAACAAATTATTACATCAACATTGACAAGAAATG
GTCAATATCTTTCACCATATGAAAGTTGGTCAGCATCAACTCTTCTGAATGAACATGAAG
TGCGACAATCACCTTTAGATATGTATGTCGATGCAAATGGAGACATTGTGCCACAAATAC
CTCCCCATCCTTATCATCAACAACAAAACACTGCATATGGATATGTAGATCCAAATAGAG
CACCTCCGCCTCAATACAGCAGCGTTTATCGACCATTAGTAAGAGGTGTACCTGGTCAAG
GATCAATGCAATCTGTAGTTAGTAGTGCGATGATGAGTAATAGTGATGGAAAGAAAATAC
GAAATGTAACGATGGTGTAA
>g14384.t2 Gene=g14384 Length=322
MPWPLAETIPHSIGQGASVTLNLLNEPTLIGVPFYVAIRSANTISNYARIFVPKRKPTAS
PTYTHIDNDIYETDPSMEPADEDDGIFKHHNLASIPWSIIIPIIVCCLFILLAFIIYFCC
CRRNYKQPTKSPAKPAISVITPSTPVQQNQYHVEPGYLVDVPDHHTVGLPMIDDELMKPD
FTDHDKMLIEEMKQQQRFQQAFDQQQQIITSTLTRNGQYLSPYESWSASTLLNEHEVRQS
PLDMYVDANGDIVPQIPPHPYHQQQNTAYGYVDPNRAPPPQYSSVYRPLVRGVPGQGSMQ
SVVSSAMMSNSDGKKIRNVTMV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g14384.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 96 | - |
| 4 | g14384.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 120 | - |
| 2 | g14384.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 121 | 322 | - |
| 1 | g14384.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 119 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
