General information for g14389.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GATOR complex protein Iml1.
Parent gene
- The parent gene g14389 is located on chr_4: 235182..236686 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14389 | g14389.t6 | isoform | g14389.t6 | 235182 | 236686 |
| chr_4 | g14389 | g14389.t6 | exon | g14389.t6.exon1 | 235182 | 235827 |
| chr_4 | g14389 | g14389.t6 | cds | g14389.t6.CDS1 | 235291 | 235827 |
| chr_4 | g14389 | g14389.t6 | exon | g14389.t6.exon2 | 235895 | 236686 |
| chr_4 | g14389 | g14389.t6 | cds | g14389.t6.CDS2 | 235895 | 236686 |
| chr_4 | g14389 | g14389.t6 | TTS | g14389.t6 | 236738 | 236738 |
| chr_4 | g14389 | g14389.t6 | TSS | g14389.t6 | NA | NA |
Sequences
>g14389.t6 Gene=g14389 Length=1438
TTTTGCTCCTGATCCACCGAAATTCAAATCATCATCACCCATTAATGAGATATTTGATGC
CTTTAAAAATCCAAATACTGGTGTTGGATTTCTTGAACCATTGCCGAGTATGCCTTCACT
TACCTTTTCATCTTATGATGCTATCATATGGATTTTCAATCGAATTGAAGATGTCACTAA
TCCATTAGATATTTTGGAAACAATGAAAGAACAACGGTTAATTTGTCATGCTAGTGGAGA
TTTTAATATGCCAATTATTCCTGGTTTTTATATGTATTACATAGCACAACAAGATGTCAA
TTCATCAGATTATCGAGCACCGTTGGGAGATCGAGATGCATTTAGTTTTGAATGGATGGA
AGTAGAAATTCCAATGAAATATATTATGTCAACATTAAAACCATCAGTTGCTACTAAAAC
TACACCCAATGAAAATGATGTGCCAGCATTTTTGAAAGAGGAAATCGAGAGAAGAGATTT
AGATGGAAAATTGTACAAACATTCGCATTTAGAAGTTGATTTATCTGCAAAAAGTGACAG
AATTGAATGGGGTCATGCAAGATATCACAAACATTTTATTCCTGGGCATGCCTTTGAAAT
TGTAGTTCAATGGTTAGTTGCATCTGGACCTATTGTTTATGATCTGATTTACAACTGGAG
TAGAAAAGCAACACAATGTAGTTATCAATTGGTTCCAATTCCATGCGATCCTCTTGCGGA
ACCTTTTAGTTTATTTGAAAAATCAGATCCACTTCGAGGTCCAATTTTTGTGCCACTAAA
TATTGATTGTCTACATCAAAATCGTTCAAGCATTTTTGAAGATTTTAAGCGTGATACATG
GGGTGAAAGGCTGCTTTTATTTCAAGAAGAAATTGCTAAACGTTTTGGTTTTATTCCTAG
AGAATGTGAAACTAAAACCGGTTCAAATGATATCACACCAGATTGGCAATACATTCATAC
TAGTGGCAATATGTTTGTTGTAATAACTTCATCAACCAATAAAGTACGTAACACAATGAG
ACGTTTAGGAATGGGTAATGGTAGTCATTCTAGTCCAACTGATAGCTTAAAATCCCAGAA
GCGTCTTAAAAATTATTATCATGTTCAACAACAACAACAACAAACTTCAGTACCACAAAA
AGAAAATTATATTAATAGACATGTACAAAATAATTCTAATGGCAGTCGAGATTCAGATGA
AGAAGGCTTTAGTAGCATGCAAAGGAAACATCCAATTGGATTTCTTTGGCAATGGAATCA
TATGATTGCTAATAAAAAATGGAAATCATTGTCTATCAATGGAACAGATGAAATATTTCA
ACTACGGATGCTACGTGACTTTAAAAATTTTTGCTCTAATGCTGATGGAAGGCTTATGAA
ATTTTGGGATCAAGCTTGGGAAAAGAAAGAAAAATTGTCACTATTAGGTGCAAATTAA
>g14389.t6 Gene=g14389 Length=442
MPSLTFSSYDAIIWIFNRIEDVTNPLDILETMKEQRLICHASGDFNMPIIPGFYMYYIAQ
QDVNSSDYRAPLGDRDAFSFEWMEVEIPMKYIMSTLKPSVATKTTPNENDVPAFLKEEIE
RRDLDGKLYKHSHLEVDLSAKSDRIEWGHARYHKHFIPGHAFEIVVQWLVASGPIVYDLI
YNWSRKATQCSYQLVPIPCDPLAEPFSLFEKSDPLRGPIFVPLNIDCLHQNRSSIFEDFK
RDTWGERLLLFQEEIAKRFGFIPRECETKTGSNDITPDWQYIHTSGNMFVVITSSTNKVR
NTMRRLGMGNGSHSSPTDSLKSQKRLKNYYHVQQQQQQTSVPQKENYINRHVQNNSNGSR
DSDEEGFSSMQRKHPIGFLWQWNHMIANKKWKSLSINGTDEIFQLRMLRDFKNFCSNADG
RLMKFWDQAWEKKEKLSLLGAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14389.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 364 | - |
| 3 | g14389.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 368 | - |
| 1 | g14389.t6 | PANTHER | PTHR13179 | DEP DOMAIN CONTAINING PROTEIN 5 | 2 | 435 | 2.9E-73 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005096 | GTPase activator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
