General information for g14444.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g14444 is located on chr_4: 611793..614042 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14444 | g14444.t1 | isoform | g14444.t1 | 611793 | 614042 |
| chr_4 | g14444 | g14444.t1 | exon | g14444.t1.exon1 | 611793 | 611834 |
| chr_4 | g14444 | g14444.t1 | cds | g14444.t1.CDS1 | 611793 | 611834 |
| chr_4 | g14444 | g14444.t1 | exon | g14444.t1.exon2 | 612016 | 612178 |
| chr_4 | g14444 | g14444.t1 | cds | g14444.t1.CDS2 | 612016 | 612178 |
| chr_4 | g14444 | g14444.t1 | exon | g14444.t1.exon3 | 613365 | 613497 |
| chr_4 | g14444 | g14444.t1 | cds | g14444.t1.CDS3 | 613365 | 613497 |
| chr_4 | g14444 | g14444.t1 | exon | g14444.t1.exon4 | 613632 | 613889 |
| chr_4 | g14444 | g14444.t1 | cds | g14444.t1.CDS4 | 613632 | 613889 |
| chr_4 | g14444 | g14444.t1 | exon | g14444.t1.exon5 | 613943 | 614042 |
| chr_4 | g14444 | g14444.t1 | cds | g14444.t1.CDS5 | 613943 | 614042 |
| chr_4 | g14444 | g14444.t1 | TSS | g14444.t1 | NA | NA |
| chr_4 | g14444 | g14444.t1 | TTS | g14444.t1 | NA | NA |
Sequences
>g14444.t1 Gene=g14444 Length=696
ATGGAAAAGGATTATATAATTGATTTAATACCTTGTGATACTACTGTCAATATGATTTTG
GCTGTTGGTTGGAAAGTAGGAACTGAACAAAATGCTAAAAATTTACCAGTTGAAGCTTAC
AATTGCTCATCAAGCTCTCTTAATCCTATAAGTTATAAAGAATTATACAGTGGTTTTGTA
GAAATGGGAAGAAAATATCCATACAGCAATGTATATTCATATCCAAGAATCAAGTTTTAT
AACACAGATTTTTTTTCCAATTTGGCAGTTTTTACTTTACAAAAAATTCCAGCTTATTTC
GTAGATTTTACTTTAAAACTCAAAGAGAAAAAGCCAAAACTAATAAAAATGATTGACACA
ACATATGACAATTACCATAAAGTCAAATTTGCAACAACAACAAGAACAACTTTTCATAGT
GAAAATCCAATAAAATTAATGAAATTAATGAGCCAAAAAGATTTACAAGAATTTGATTTT
GACGTGAGAAAAGTAAATTGGAAAAGTTTCATTGAAACTTATTATTTAGGAATGCGACAA
TATTTAGGAAAAGAAAAATCCGATAATTTTCCAATTCTACGAAAGAAAGTTCAAAGACTC
AAGTTTAAAAATTATCTAGCAACTGGATTGACAACTTTTGGTTCATTATTTGTACTATAC
AAGAGTTATAATCTAATATCAAAAAATAAAAACTAG
>g14444.t1 Gene=g14444 Length=231
MEKDYIIDLIPCDTTVNMILAVGWKVGTEQNAKNLPVEAYNCSSSSLNPISYKELYSGFV
EMGRKYPYSNVYSYPRIKFYNTDFFSNLAVFTLQKIPAYFVDFTLKLKEKKPKLIKMIDT
TYDNYHKVKFATTTRTTFHSENPIKLMKLMSQKDLQEFDFDVRKVNWKSFIETYYLGMRQ
YLGKEKSDNFPILRKKVQRLKFKNYLATGLTTFGSLFVLYKSYNLISKNKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14444.t1 | CDD | cd09071 | FAR_C | 93 | 182 | 1.49487E-12 |
| 2 | g14444.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 2 | 216 | 2.9E-38 |
| 3 | g14444.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 216 | 2.9E-38 |
| 1 | g14444.t1 | Pfam | PF03015 | Male sterility protein | 93 | 185 | 8.0E-22 |
| 5 | g14444.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 203 | - |
| 7 | g14444.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 223 | - |
| 6 | g14444.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 224 | 231 | - |
| 4 | g14444.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 205 | 227 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed