General information for g1451.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1, isoform C.
Parent gene
- The parent gene g1451 is located on chr_3: 11016647..11018505 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1451 | g1451.t2 | isoform | g1451.t2 | 11016029 | 11017409 |
| chr_3 | g1451 | g1451.t2 | exon | g1451.t2.exon1 | 11016029 | 11016517 |
| chr_3 | g1451 | g1451.t2 | cds | g1451.t2.CDS1 | 11016498 | 11016517 |
| chr_3 | g1451 | g1451.t2 | exon | g1451.t2.exon2 | 11016697 | 11017409 |
| chr_3 | g1451 | g1451.t2 | cds | g1451.t2.CDS2 | 11016697 | 11017141 |
| chr_3 | g1451 | g1451.t2 | TSS | g1451.t2 | NA | NA |
| chr_3 | g1451 | g1451.t2 | TTS | g1451.t2 | NA | NA |
Sequences
>g1451.t2 Gene=g1451 Length=1202
ATGAAACTTTATGTTGTTAATGATGGACCTCCATCACTCGCATGTCGAATGACATTGAAA
TATCTTAACGTTCCATTCGAATCAATCGATGTGAATTTTAATGTTGGCGAACATTTGACC
GATGAGTATGCAAAGGTGAGAAATAAAACATTTAATTTAATTAACTATTAATCCAATTTA
TTATTTCTACATAAATCAGTTGAATCCACAAAAAGAAATTCCAGTTTTGGACGATAATGG
ATTCCTATTGAGTGAGCACATTGCAATTATGCAATACATTTGCGACAAATACGCTCCTGA
TACGCCAGCTTATCCAAAAGATCCTCAATTGCGTGCTCTTGTCAATCATCGTCTTTGCTT
TAATATGGCACACTTTTATAATGCTGTCGCTCCCTATACTCTTGCACCAATTTTCTTCGA
ATATCCTCGAAATTCTATGGGTTTAAAACGAGTGCATATGGCTCTCGAAGTTTTTGAGGA
ATATTTAAAACGAGTTGGTAAAAAATATGTTGTTGCTGATCATGTTACAATTGCTGATTT
TGCATTGATTTCTTCAATGGTTTGCTTGGAAGGAATTGCATTTCCTTTTGATAAATTTAC
ACGTGTTAAAACATGGTATGAAACATTCAAAAATGAAAACCCGGAAGTTTGGTCTATTGC
TGATGGTGTTTTGAAAATCATTCAAGATTTGGAGAAAAATCCACCTGATCTCAACATTTC
ATTGCTATATTAAATATTCTGTCTCTTATTTATGTAAAATTTCATATTATCAAGTCTAAT
TATCTTTAAATGTCTGCTATTGGAAAATAATTTCATACAACTTTCAATAAAAAAATCAAT
CAATGTAATATATTCGTTAATTCGTGACGAATAAATAATGATCAACTAGGTAAGAATCAC
AAAGTGCATGCACAAATCATTTAGGCACTTGTTTCAAATTTTTATTCTCCCTCATTCCAC
AAGGTCAATCAAATAAATGAACGCCTGCAACTGCACATACGACACTCAAAAATACATTTT
CTTATCGACATCAATTCATCACAATTTTTACACCATCTGTCGAGTTTTAAAATAATCAAG
TGTGGTGTATGCTCATATATGAAAAGAATAAAATTGAGGGTGAAATTACGTTTGATGAAT
GGTTATATTTATGGACATGTGAATGTCACATAATTATTGTAATTTATAATTCTTACATGA
AT
>g1451.t2 Gene=g1451 Length=154
MQYICDKYAPDTPAYPKDPQLRALVNHRLCFNMAHFYNAVAPYTLAPIFFEYPRNSMGLK
RVHMALEVFEEYLKRVGKKYVVADHVTIADFALISSMVCLEGIAFPFDKFTRVKTWYETF
KNENPEVWSIADGVLKIIQDLEKNPPDLNISLLY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1451.t2 | Gene3D | G3DSA:1.20.1050.10 | - | 11 | 142 | 0.000 |
| 2 | g1451.t2 | PANTHER | PTHR43969:SF7 | GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN | 1 | 148 | 0.000 |
| 3 | g1451.t2 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 148 | 0.000 |
| 1 | g1451.t2 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 60 | 123 | 0.000 |
| 6 | g1451.t2 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 18 | 147 | 16.439 |
| 4 | g1451.t2 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 3 | 122 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed