General information for g1451.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1, isoform C.
Parent gene
- The parent gene g1451 is located on chr_3: 11016647..11018505 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1451 | g1451.t5 | TTS | g1451.t5 | 11016552 | 11016552 |
| chr_3 | g1451 | g1451.t5 | isoform | g1451.t5 | 11016647 | 11018505 |
| chr_3 | g1451 | g1451.t5 | exon | g1451.t5.exon1 | 11016647 | 11017185 |
| chr_3 | g1451 | g1451.t5 | cds | g1451.t5.CDS1 | 11016647 | 11017185 |
| chr_3 | g1451 | g1451.t5 | exon | g1451.t5.exon2 | 11017285 | 11017411 |
| chr_3 | g1451 | g1451.t5 | cds | g1451.t5.CDS2 | 11017285 | 11017288 |
| chr_3 | g1451 | g1451.t5 | exon | g1451.t5.exon3 | 11018389 | 11018505 |
| chr_3 | g1451 | g1451.t5 | TSS | g1451.t5 | 11018505 | 11018505 |
Sequences
>g1451.t5 Gene=g1451 Length=783
AGTGTACTTTTCGTTGTCGGTCGAGCGAGAAGCCTCTCGAGAATTCAAATTGTCTTTATC
GCTATAAAACTCACGTTCTATATTTTTATTCTAAATCATCAACCGAAAAACTATATAATA
TGAAACTTTATGTTGTTAATGATGGACCTCCATCACTCGCATGTCGAATGACATTGAAAT
ATCTTAACGTTCCATTCGAATCAATCGATGTGAATTTTAATGTTGGCGAACATTTGACCG
ATGATTTTGGACGATAATGGATTCCTATTGAGTGAGCACATTGCAATTATGCAATACATT
TGCGACAAATACGCTCCTGATACGCCAGCTTATCCAAAAGATCCTCAATTGCGTGCTCTT
GTCAATCATCGTCTTTGCTTTAATATGGCACACTTTTATAATGCTGTCGCTCCCTATACT
CTTGCACCAATTTTCTTCGAATATCCTCGAAATTCTATGGGTTTAAAACGAGTGCATATG
GCTCTCGAAGTTTTTGAGGAATATTTAAAACGAGTTGGTAAAAAATATGTTGTTGCTGAT
CATGTTACAATTGCTGATTTTGCATTGATTTCTTCAATGGTTTGCTTGGAAGGAATTGCA
TTTCCTTTTGATAAATTTACACGTGTTAAAACATGGTATGAAACATTCAAAAATGAAAAC
CCGGAAGTTTGGTCTATTGCTGATGGTGTTTTGAAAATCATTCAAGATTTGGAGAAAAAT
CCACCTGATCTCAGTAAATTAAATCATCCAATCCATCCAGTCAGAAAAACAGCAAAAAAA
TAA
>g1451.t5 Gene=g1451 Length=180
MILDDNGFLLSEHIAIMQYICDKYAPDTPAYPKDPQLRALVNHRLCFNMAHFYNAVAPYT
LAPIFFEYPRNSMGLKRVHMALEVFEEYLKRVGKKYVVADHVTIADFALISSMVCLEGIA
FPFDKFTRVKTWYETFKNENPEVWSIADGVLKIIQDLEKNPPDLSKLNHPIHPVRKTAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1451.t5 | Gene3D | G3DSA:1.20.1050.10 | - | 27 | 158 | 0.000 |
| 2 | g1451.t5 | PANTHER | PTHR43969:SF7 | GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN | 2 | 178 | 0.000 |
| 3 | g1451.t5 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 2 | 178 | 0.000 |
| 1 | g1451.t5 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 76 | 139 | 0.000 |
| 7 | g1451.t5 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 28 | 8.108 |
| 6 | g1451.t5 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 34 | 163 | 16.439 |
| 4 | g1451.t5 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 19 | 138 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed