Gene loci information

Transcript annotation

  • This transcript has been annotated as Inorganic pyrophosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1457 g1457.t11 TSS g1457.t11 11046179 11046179
chr_3 g1457 g1457.t11 isoform g1457.t11 11046205 11047585
chr_3 g1457 g1457.t11 exon g1457.t11.exon1 11046205 11046271
chr_3 g1457 g1457.t11 cds g1457.t11.CDS1 11046205 11046271
chr_3 g1457 g1457.t11 exon g1457.t11.exon2 11046555 11046673
chr_3 g1457 g1457.t11 cds g1457.t11.CDS2 11046555 11046673
chr_3 g1457 g1457.t11 exon g1457.t11.exon3 11046751 11047114
chr_3 g1457 g1457.t11 cds g1457.t11.CDS3 11046751 11047114
chr_3 g1457 g1457.t11 exon g1457.t11.exon4 11047163 11047298
chr_3 g1457 g1457.t11 cds g1457.t11.CDS4 11047163 11047298
chr_3 g1457 g1457.t11 exon g1457.t11.exon5 11047444 11047585
chr_3 g1457 g1457.t11 cds g1457.t11.CDS5 11047444 11047585
chr_3 g1457 g1457.t11 TTS g1457.t11 11047864 11047864

Sequences

>g1457.t11 Gene=g1457 Length=828
ATGGCTGGAAAATTTGTTGCTGTCGAAAAAGGAGCTCCCAATTCAAAGGATTTCCGAGTA
TTCTTTAAAAATGCAGCTGGAACACCAATTTCACCTTTACATGACATTCCTTTATTTGCC
AACGATAGTTCACAGGTCTATAATATGGTAGTTGAAGTGCCGCGTTGGACAAATGCAAAG
ATGGAGATTACACTCGCGGAAGAATTAAATCCAATCAAACAAGATATTAAAAAAGAGAAG
CTTAGATTTGTTGCTAATGTATTCCCTCATAAAGGATACATTTGGAATTATGGTGCATTG
CCTCAAACATGGGAATATCCTGGACATGTAGATAAATCAACTGGTTGCAAAGGTGACAAC
GATCCAATTGATGTTTGTGAAATTGGCTCACGTGTAGCTAAACGCGGTGATGTCATTCAA
GTTAAAATTCTCGGCACTCTTGCACTCATCGATGAAGGTGAAACTGACTGGAAAGTTTTT
GCTATTGATATTAATGATCCAGTTGCTGATCAAATGGAAGATGTACAAGACATTGAGAAA
TTCTTCCCTGATGGTAAACCTGAAAATCAATTTGCATTTAATGCTGAAGCAAAGAACGCT
GCATTTGCTAAAAATATCGTGACGGAAACTCACGCTTTTTGGCAGCGCTTGATTAAAAAA
GAAGTCGAAAGCCCTAAGATTTCATGTTCAACTGTAGAAAATACAGATTCACCATTTGTT
ATCTCTAGCGATCAAGCAGAAGAAATATTTTCAAAAGCCACTGAAGGAGGCGATCCAGAG
CCATTTAATGAAGCAATCAACAAGTGGCATTTTCTTCATCTTCAATAG

>g1457.t11 Gene=g1457 Length=275
MAGKFVAVEKGAPNSKDFRVFFKNAAGTPISPLHDIPLFANDSSQVYNMVVEVPRWTNAK
MEITLAEELNPIKQDIKKEKLRFVANVFPHKGYIWNYGALPQTWEYPGHVDKSTGCKGDN
DPIDVCEIGSRVAKRGDVIQVKILGTLALIDEGETDWKVFAIDINDPVADQMEDVQDIEK
FFPDGKPENQFAFNAEAKNAAFAKNIVTETHAFWQRLIKKEVESPKISCSTVENTDSPFV
ISSDQAEEIFSKATEGGDPEPFNEAINKWHFLHLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g1457.t11 CDD cd00412 pyrophosphatase 45 211 4.37483E-58
6 g1457.t11 Gene3D G3DSA:3.90.80.10 Inorganic Pyrophosphatase 6 275 1.1E-111
2 g1457.t11 PANTHER PTHR10286:SF43 PYROPHOSPHATASE (INORGANIC) 1B 4 244 1.4E-103
3 g1457.t11 PANTHER PTHR10286 INORGANIC PYROPHOSPHATASE 4 244 1.4E-103
1 g1457.t11 Pfam PF00719 Inorganic pyrophosphatase 49 215 1.4E-44
5 g1457.t11 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 119 125 -
4 g1457.t11 SUPERFAMILY SSF50324 Inorganic pyrophosphatase 6 272 1.1E-90

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0004427 inorganic diphosphatase activity MF
GO:0006796 phosphate-containing compound metabolic process BP
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed