Gene loci information

Transcript annotation

  • This transcript has been annotated as Inorganic pyrophosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1457 g1457.t6 TSS g1457.t6 11046179 11046179
chr_3 g1457 g1457.t6 isoform g1457.t6 11046205 11047585
chr_3 g1457 g1457.t6 exon g1457.t6.exon1 11046205 11046271
chr_3 g1457 g1457.t6 cds g1457.t6.CDS1 11046205 11046271
chr_3 g1457 g1457.t6 exon g1457.t6.exon2 11046564 11046673
chr_3 g1457 g1457.t6 cds g1457.t6.CDS2 11046564 11046673
chr_3 g1457 g1457.t6 exon g1457.t6.exon3 11046751 11047298
chr_3 g1457 g1457.t6 cds g1457.t6.CDS3 11046751 11047298
chr_3 g1457 g1457.t6 exon g1457.t6.exon4 11047444 11047585
chr_3 g1457 g1457.t6 cds g1457.t6.CDS4 11047444 11047585
chr_3 g1457 g1457.t6 TTS g1457.t6 11047864 11047864

Sequences

>g1457.t6 Gene=g1457 Length=867
ATGGCTGGAAAATTTGTTGCTGTCGAAAAAGGAGCTCCCAATTCAAAGGATTTCCGAGTA
TTCTTTACTGGAACACCAATTTCACCTTTACATGACATTCCTTTATTTGCCAACGATAGT
TCACAGGTCTATAATATGGTAGTTGAAGTGCCGCGTTGGACAAATGCAAAGATGGAGATT
ACACTCGCGGAAGAATTAAATCCAATCAAACAAGATATTAAAAAAGAGAAGCTTAGATTT
GTTGCTAATGTATTCCCTCATAAAGGATACATTTGGAATTATGGTGCATTGCCTCAAACA
TGGGAATATCCTGGACATGTAGATAAATCAACTGGTTGCAAAGGTGACAACGATCCAATT
GATGTTTGTGAAATTGGCTCACGTGTAGCTAAACGCGGTGATGTCATTCAAGTTAAAATT
CTCGGCACTCTTGCACTCATCGATGAAGGTGAAACTGACTGGAAAGTTTTTGCTATTGAT
ATTAATGATCCAGTTGCTGATCAAATGGAAGATGTACAAGACATTGAGAAATTCTTCCCT
GGTTTATTAAGAGCAACAGTAGAATGGTTCAAATTTTATAAAGTACCAGATGGTAAACCT
GAAAATCAATTTGCATTTAATGCTGAAGCAAAGAACGCTGCATTTGCTAAAAATATCGTG
ACGGAAACTCACGCTTTTTGGCAGCGCTTGATTAAAAAAGAAGTCGAAAGCCCTAAGATT
TCATGTTCAACTGTAGAAAATACAGATTCACCATTTGTTATCTCTAGCGATCAAGCAGAA
GAAATATTTTCAAAAGCCACTGAAGGAGGCGATCCAGAGCCATTTAATGAAGCAATCAAC
AAGTGGCATTTTCTTCATCTTCAATAG

>g1457.t6 Gene=g1457 Length=288
MAGKFVAVEKGAPNSKDFRVFFTGTPISPLHDIPLFANDSSQVYNMVVEVPRWTNAKMEI
TLAEELNPIKQDIKKEKLRFVANVFPHKGYIWNYGALPQTWEYPGHVDKSTGCKGDNDPI
DVCEIGSRVAKRGDVIQVKILGTLALIDEGETDWKVFAIDINDPVADQMEDVQDIEKFFP
GLLRATVEWFKFYKVPDGKPENQFAFNAEAKNAAFAKNIVTETHAFWQRLIKKEVESPKI
SCSTVENTDSPFVISSDQAEEIFSKATEGGDPEPFNEAINKWHFLHLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g1457.t6 CDD cd00412 pyrophosphatase 42 224 1.96909E-67
6 g1457.t6 Gene3D G3DSA:3.90.80.10 Inorganic Pyrophosphatase 6 288 6.3E-125
2 g1457.t6 PANTHER PTHR10286:SF43 PYROPHOSPHATASE (INORGANIC) 1B 4 258 3.6E-115
3 g1457.t6 PANTHER PTHR10286 INORGANIC PYROPHOSPHATASE 4 258 3.6E-115
1 g1457.t6 Pfam PF00719 Inorganic pyrophosphatase 46 228 2.6E-54
5 g1457.t6 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 116 122 -
4 g1457.t6 SUPERFAMILY SSF50324 Inorganic pyrophosphatase 6 285 7.06E-100

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0004427 inorganic diphosphatase activity MF
GO:0006796 phosphate-containing compound metabolic process BP
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values