Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Inorganic pyrophosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1457 g1457.t7 TSS g1457.t7 11046179 11046179
chr_3 g1457 g1457.t7 isoform g1457.t7 11046205 11047585
chr_3 g1457 g1457.t7 exon g1457.t7.exon1 11046205 11046275
chr_3 g1457 g1457.t7 exon g1457.t7.exon2 11046931 11047298
chr_3 g1457 g1457.t7 cds g1457.t7.CDS1 11047078 11047298
chr_3 g1457 g1457.t7 exon g1457.t7.exon3 11047444 11047585
chr_3 g1457 g1457.t7 cds g1457.t7.CDS2 11047444 11047585
chr_3 g1457 g1457.t7 TTS g1457.t7 11047864 11047864

Sequences

>g1457.t7 Gene=g1457 Length=581
ATGGCTGGAAAATTTGTTGCTGTCGAAAAAGGAGCTCCCAATTCAAAGGATTTCCGAGTA
TTCTTTAGTAAATTGATGTTTGTGAAATTGGCTCACGTGTAGCTAAACGCGGTGATGTCA
TTCAAGTTAAAATTCTCGGCACTCTTGCACTCATCGATGAAGGTGAAACTGACTGGAAAG
TTTTTGCTATTGATATTAATGATCCAGTTGCTGATCAAATGGAAGATGTACAAGACATTG
AGAAATTCTTCCCTGGTTTATTAAGAGCAACAGTAGAATGGTTCAAATTTTATAAAGTAC
CAGATGGTAAACCTGAAAATCAATTTGCATTTAATGCTGAAGCAAAGAACGCTGCATTTG
CTAAAAATATCGTGACGGAAACTCACGCTTTTTGGCAGCGCTTGATTAAAAAAGAAGTCG
AAAGCCCTAAGATTTCATGTTCAACTGTAGAAAATACAGATTCACCATTTGTTATCTCTA
GCGATCAAGCAGAAGAAATATTTTCAAAAGCCACTGAAGGAGGCGATCCAGAGCCATTTA
ATGAAGCAATCAACAAGTGGCATTTTCTTCATCTTCAATAG

>g1457.t7 Gene=g1457 Length=120
MEDVQDIEKFFPGLLRATVEWFKFYKVPDGKPENQFAFNAEAKNAAFAKNIVTETHAFWQ
RLIKKEVESPKISCSTVENTDSPFVISSDQAEEIFSKATEGGDPEPFNEAINKWHFLHLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g1457.t7 Gene3D G3DSA:3.90.80.10 Inorganic Pyrophosphatase 1 120 0
2 g1457.t7 PANTHER PTHR10286:SF49 INORGANIC PYROPHOSPHATASE 2, MITOCHONDRIAL 2 93 0
3 g1457.t7 PANTHER PTHR10286 INORGANIC PYROPHOSPHATASE 2 93 0
1 g1457.t7 Pfam PF00719 Inorganic pyrophosphatase 2 60 0
4 g1457.t7 SUPERFAMILY SSF50324 Inorganic pyrophosphatase 2 117 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0004427 inorganic diphosphatase activity MF
GO:0006796 phosphate-containing compound metabolic process BP
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed