General information for g14640.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14640 is located on chr_4: 1659447..1660678 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14640 | g14640.t1 | isoform | g14640.t1 | 1659447 | 1660678 |
| chr_4 | g14640 | g14640.t1 | exon | g14640.t1.exon1 | 1659447 | 1660520 |
| chr_4 | g14640 | g14640.t1 | cds | g14640.t1.CDS1 | 1659447 | 1660520 |
| chr_4 | g14640 | g14640.t1 | exon | g14640.t1.exon2 | 1660571 | 1660678 |
| chr_4 | g14640 | g14640.t1 | cds | g14640.t1.CDS2 | 1660571 | 1660678 |
| chr_4 | g14640 | g14640.t1 | TSS | g14640.t1 | NA | NA |
| chr_4 | g14640 | g14640.t1 | TTS | g14640.t1 | NA | NA |
Sequences
>g14640.t1 Gene=g14640 Length=1182
ATGAAAGTGACACTGGTAACAATTCTTTTGCTGCCTTTTGTGTTTGCATATTATGACCAA
AAGTCAGAAAATAGAATTATTACAAATTTAATTTTAGAAGTGATGCGAAAGTTTTATAAA
ACTCAAACATCAACATTAAATTTTCTGCTCTTGATCAATGATGAAAAATTGAAATTTGAA
GTTGAAGAACTTGTCAATGAATTGCTGAAAAATGTTGATCAAGAAATTGCAATCGCAGTG
GAAGATAATGAAAATACAAAATATGCAGTTCAAAAGAAATTTTGTGTGATTTTCGTGGAT
TCTTTTGAATCATTCAATAAAATTAACCCAAACTTGCATTTTCACTTTAGTGGATTTTAC
ACAATAATTTTGATGTCAAAAAACAAAGAATTAGAAATGAAGAAAATTTTTGAACTTTTT
TGGTCCCATCAAATTGTCAATGTCAACATTTTGCAAAATAAAAATTCGAAAATTGTCAAT
TTTCACACTTTTCATCCTTACATATCAAAACATTGTGGACAAGTTCAAATGATAAAAATC
AACAGTTTTAATGAAATAAAACTGAAAAATTCTCGAATTTTTCCAAATAAAATGAAAAAT
TTGCATGGATGTAAATTGAAAGTTTCAGTAATTGAAAGTCCACCTTATGTTATGAGAAAA
TTTGATATCAAAAAAATCACAGATGCTTTTGGCTTAGATTTGTACATAATTTTAAATCAT
GCACTTTTAATGAATTTTTCTTTAGAAATTTTATATTTGAACAAAGCAAATGAAACTGAC
AAAGCAAGTGGAATCTTTGATGCAACTGGTGTTGCACTTTCTAACTTAATCAAAGGAAAT
ACCAATTTTACTGCTGGTCTAATGATTCAAAGTGAAGTTAAAAATAAAATTTCTACACCA
GGTTACAGTTATCATACAACAAAAGTTGTTTGGGTCATTCCAACAGGGCAACCTTTAACA
GTTTGGGAAATTTTTACTAGACCTTTTCAAAATTCAGTTTGGATATTTATATTGTCAACA
TACATAGCTACACGTATCATAATTTTTCTAATTTGGACAAAAGGATCAAAAAAAGTTAAA
AATTTTGTTTTTGGACGTGATATTCGTTATCCATTTACAAATCTTATAATTATTCTTTTT
GGAATGTCGCTTCATAAATTACCAGGTCGAAATTTTGCATGA
>g14640.t1 Gene=g14640 Length=393
MKVTLVTILLLPFVFAYYDQKSENRIITNLILEVMRKFYKTQTSTLNFLLLINDEKLKFE
VEELVNELLKNVDQEIAIAVEDNENTKYAVQKKFCVIFVDSFESFNKINPNLHFHFSGFY
TIILMSKNKELEMKKIFELFWSHQIVNVNILQNKNSKIVNFHTFHPYISKHCGQVQMIKI
NSFNEIKLKNSRIFPNKMKNLHGCKLKVSVIESPPYVMRKFDIKKITDAFGLDLYIILNH
ALLMNFSLEILYLNKANETDKASGIFDATGVALSNLIKGNTNFTAGLMIQSEVKNKISTP
GYSYHTTKVVWVIPTGQPLTVWEIFTRPFQNSVWIFILSTYIATRIIIFLIWTKGSKKVK
NFVFGRDIRYPFTNLIIILFGMSLHKLPGRNFA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14640.t1 | Gene3D | G3DSA:3.40.190.10 | - | 197 | 345 | 3.4E-8 |
| 1 | g14640.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 116 | 393 | 1.4E-20 |
| 2 | g14640.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 116 | 393 | 1.4E-20 |
| 10 | g14640.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 11 | g14640.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 12 | g14640.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 11 | - |
| 15 | g14640.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 16 | - |
| 8 | g14640.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 332 | - |
| 13 | g14640.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 333 | 352 | - |
| 7 | g14640.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 353 | 371 | - |
| 14 | g14640.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 372 | 388 | - |
| 9 | g14640.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 389 | 393 | - |
| 5 | g14640.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
| 4 | g14640.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 333 | 355 | - |
| 3 | g14640.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 368 | 385 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed