Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein timeless.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14796 g14796.t1 isoform g14796.t1 2387193 2391747
chr_4 g14796 g14796.t1 exon g14796.t1.exon1 2387193 2387983
chr_4 g14796 g14796.t1 cds g14796.t1.CDS1 2387193 2387983
chr_4 g14796 g14796.t1 exon g14796.t1.exon2 2388040 2388310
chr_4 g14796 g14796.t1 cds g14796.t1.CDS2 2388040 2388310
chr_4 g14796 g14796.t1 exon g14796.t1.exon3 2388376 2388523
chr_4 g14796 g14796.t1 cds g14796.t1.CDS3 2388376 2388523
chr_4 g14796 g14796.t1 exon g14796.t1.exon4 2388806 2389747
chr_4 g14796 g14796.t1 cds g14796.t1.CDS4 2388806 2389747
chr_4 g14796 g14796.t1 exon g14796.t1.exon5 2389804 2389925
chr_4 g14796 g14796.t1 cds g14796.t1.CDS5 2389804 2389925
chr_4 g14796 g14796.t1 exon g14796.t1.exon6 2390158 2390261
chr_4 g14796 g14796.t1 cds g14796.t1.CDS6 2390158 2390261
chr_4 g14796 g14796.t1 exon g14796.t1.exon7 2390322 2390637
chr_4 g14796 g14796.t1 cds g14796.t1.CDS7 2390322 2390637
chr_4 g14796 g14796.t1 exon g14796.t1.exon8 2390710 2390878
chr_4 g14796 g14796.t1 cds g14796.t1.CDS8 2390710 2390878
chr_4 g14796 g14796.t1 exon g14796.t1.exon9 2390940 2391109
chr_4 g14796 g14796.t1 cds g14796.t1.CDS9 2390940 2391109
chr_4 g14796 g14796.t1 exon g14796.t1.exon10 2391173 2391387
chr_4 g14796 g14796.t1 cds g14796.t1.CDS10 2391173 2391387
chr_4 g14796 g14796.t1 exon g14796.t1.exon11 2391443 2391619
chr_4 g14796 g14796.t1 cds g14796.t1.CDS11 2391443 2391619
chr_4 g14796 g14796.t1 exon g14796.t1.exon12 2391678 2391747
chr_4 g14796 g14796.t1 cds g14796.t1.CDS12 2391678 2391747
chr_4 g14796 g14796.t1 TSS g14796.t1 NA NA
chr_4 g14796 g14796.t1 TTS g14796.t1 NA NA

Sequences

>g14796.t1 Gene=g14796 Length=3495
ATGGAACTTTTAAATAATCCTCAAATACATAGTACTTTTGCGTCACTTGGTTCTATGCAA
GGCGAAACGTACATAATTAACGATGATTGCTTGGCAATTCTTGAGGAAATTCAATGCAAG
TTAGCTATGGAAGATCATACATTAAGAACCTATCGTCGTGCAATTGGCTTTGGACAAAAT
GTGAAAAAAGATATCGTACCATTGATTCTTAACACCAAAGATAACATTGTTCTTGACACT
GCAATAAGACTTATGGTTAACTTAACCGTACCAATAGAATGTCTTCTTTCTGTCGAAGTT
ATGAGTCGTACGGAAATTGGAAGACATACAACTTATGAACTTAGTCGACTTTTATACACA
AGCAAGGAAGTTTTTGTTGATTTGAAGCTCACAAAAGCCATCATTGATCACATGAAAGCG
ATTCTTGAGACAGATCATAAACTTTCGCTTGCACAATGTGAAAGTATAAACAATTCCTTG
CTACTATTCCGAAATATTCTTCATATACCCGAAAATCAAATGCAAACGTCAATGCAAAAT
CAAATTATATGGAATTTATTCACACAAAGCATTGATAAATTATTGATACATTTGATGTCT
TGCTCACAGCGTGTATTATTTAATTCAACAATTGTTCAATTAATTGCATTGATGTATAAA
GACCAACATGTTGGAACATTACAAAAACTTTTGAATCATTGGTTTGAAGCAGTTTCACAT
ACTGAAAGTTCCGAAGATAACGAAAGCAACACATCACCACCAAAACAATTTAGTGGTGAT
TCAAGTCCTATGCTTACAAGTGATCCTACATCAGATTCATCAGATAATGGAAGTGGTAAA
ATGACATCAATGTCGAAAGACACGCCTACTAATTCAGAGGATTCAATTCGCATTGCTAGT
TCTGACTATCAGGGATCAGCGACAATTAGAGTAAAACAGAAGAATGCAAATGAAAACGAG
ACAAATTGCAGTAACAATATTTCACTAAAATCAACTGACTCTAATCAATCAACCAGTTCA
GAAGCTATTGACTTTCATAGCAATGAAGATATTGTGATGAAGAATGCTGAAAATACTAAG
TGGGTTCATAAAACTCGTGCGAATGCTAATGCAAGTCAAAAGCACGGAGGAAAGAATTGC
ACTAAGCAACACTCATTGAATACACAATCGGAACTTAGTGATTGTGGCTATGGAACTCAG
GTTTCACAAGGTGATCAAAATCAAGAGTCAATTTCAACGTCTAGTAATGATGATGACAGT
AGTCCTATGCAAAAACCAGCACATCAAAAACCACCGAGTACTAATCAGAAACAGAGATTT
AATGCTGCCCAAAAACAACGTAATGGCGCTAGTGCAACAACACAAGAGAAAAAAGATGCT
CGTCGAAAGAAACTTGTTAAAAGAAGTAAAAGTTCAATTATTAATATGAAAGGATTAATT
CATCATACACCAAGTGATGAAGACATTTCAAATATCCTTAAAGAATTTACCGTTGATTTT
TTATTAAAAGGCTATGGTTCTTTAGTTCAAGATTTACATGCACAACTTTTAAATGATATT
CAGTTATCTATTGACACATCCCATTTTTTCTGGTTGGTCACATATTTCCTAAAATTTGCT
GCGCAATTGGAACTTGATTTAGAGCACATCAACACAGTTCTTTGTTTTGACATTGTTTCG
TATCTCACGTATGAAGGTGTAAGCCTTTGCGAACAATTAGAATTGATTTCACGTCAACAA
GGAACAGATTTGAGACCATACTTAAGACGCATTCATTTGGTAGTAACAGCGATAAGGGAA
TTTTTACAAGCTCTGGAAGTTTATAAAAACAGTAGTCACTTGTCGAACGAGGACTATCAA
TTTATTACCAATTTACAGACACAAATTTGCTGCACAGAAGATTTAAGAGACTTGTTCGTT
CTATTGTTACGATTATATAATCCAAATTTACAATCACGACAATATTTACAAGACTTAATT
GTAACTAATCATTTATTACTACTTTTATTGGATAATGCAACAAAGCAAGTTGATAACAAA
TGCAAAATTAAAATGATTGAGCATATTTCTCAATTTGCTACTGTTGATATCATGCATCAA
TACGGAATTATGCTCGAAAATTTTCATGATAATGGACCTTTTGTTAATGATTGTTGTTTT
ACTCTCATGCATCATATCGCTGGCGAAGAATTAAATCAAGTTACGATTTTATTTCAACCT
AATATTTTAAAGACATATAGCCAAATATGGGAAACAGAATACGAAATTTGTGACGACTGG
TCGGATTTAATTGAATATGTAATTCACAAATTTATAAACACACCTACAAAACCACAAATC
GCATTAAGTCCAACACGTTCCGATGGTGTGTCAATCAATGATTTATGGGCGCAAGAAGAA
ATGGACACACTTTATTGGTATTTTGTTCAGAGTAAAAAGCATAAAGATATTGTTGGTCAT
ATAATAAAGCAAATTAAAGATTCTGGACAAAAATCAAAGTCACGTATGGCTGTAATTCAA
CAATTATTGCAGCAAGATATTATTTCATTAGTCGAATATGACGATTTGATGAAATTTGAA
GATTCACAATATGAGCGAGAAGCAAAGACATCTGGCATATCTAACACAATAGAAGAAAGC
GGTTTTTCAGAAAATTCCGATATTAGCGTTAATAATCAACCAGATGACATAAAGGTGTTG
CGTGATCGACTATTGAAAGAAAACAAGGGAATGTTAGTGACATGGTTACAACGAGTTCTA
ATCGAATCAGCATTTATCAAGTTAAAAATGTATTCAATAAATGAAGATTTTTTTGAACTT
TCAAAACAATCAATAATGGAACCAGTGCCTTATCATTGCATATTGAAAAAGCAGTCAATT
CCATTGGTCCCATATAATTCTGAACAGCATAAAATTTTGGTCTATCAACCATTTGTCCTT
CTTCTTCATAAACTTGGCTTTCATTTGCCAGCTGATGCAAACAAATTGTTTGTTAGAATT
CCCGAATTTTGGACACCAGAAATCTTATTACAGGTGGCCGAAAAGCTTGGTCCAATATCA
AAAAAGAATCTTAAATTCGATATCGATCGTTTACAAAAAGAGAAAAGCATTGCAATTGCA
ATTGATGAACAAACAACATCTCAACAAGAAAGTAGTTTTAATGAAAATTCAGTATCAGAA
TCATCATTAACATGTAATCAGCCAAGCTGGTTGCAAATGGTGGTTCAAACTAAATCAACA
GCAGAGAGAATGGTCCTATCACAACTGCCAAAATTAATGGTAAAAACAAGTCCTGCCGAG
ATAGTAACAAAGCATAGTTTTTTGCAACCATCAGCACCAAAGAAACAATCTGCGACAAAT
GTTGAGTGTGACATGCAATCATCATATGGGGAAAATGACAGTCCTCTTCATGACGAAGTT
ATTGATGCATGTGAGACAAATTCTGCTGCCTCCAGTAACTTGACGAGAATGTATGTGAGC
GGTTCAGAGGATTGA

>g14796.t1 Gene=g14796 Length=1164
MELLNNPQIHSTFASLGSMQGETYIINDDCLAILEEIQCKLAMEDHTLRTYRRAIGFGQN
VKKDIVPLILNTKDNIVLDTAIRLMVNLTVPIECLLSVEVMSRTEIGRHTTYELSRLLYT
SKEVFVDLKLTKAIIDHMKAILETDHKLSLAQCESINNSLLLFRNILHIPENQMQTSMQN
QIIWNLFTQSIDKLLIHLMSCSQRVLFNSTIVQLIALMYKDQHVGTLQKLLNHWFEAVSH
TESSEDNESNTSPPKQFSGDSSPMLTSDPTSDSSDNGSGKMTSMSKDTPTNSEDSIRIAS
SDYQGSATIRVKQKNANENETNCSNNISLKSTDSNQSTSSEAIDFHSNEDIVMKNAENTK
WVHKTRANANASQKHGGKNCTKQHSLNTQSELSDCGYGTQVSQGDQNQESISTSSNDDDS
SPMQKPAHQKPPSTNQKQRFNAAQKQRNGASATTQEKKDARRKKLVKRSKSSIINMKGLI
HHTPSDEDISNILKEFTVDFLLKGYGSLVQDLHAQLLNDIQLSIDTSHFFWLVTYFLKFA
AQLELDLEHINTVLCFDIVSYLTYEGVSLCEQLELISRQQGTDLRPYLRRIHLVVTAIRE
FLQALEVYKNSSHLSNEDYQFITNLQTQICCTEDLRDLFVLLLRLYNPNLQSRQYLQDLI
VTNHLLLLLLDNATKQVDNKCKIKMIEHISQFATVDIMHQYGIMLENFHDNGPFVNDCCF
TLMHHIAGEELNQVTILFQPNILKTYSQIWETEYEICDDWSDLIEYVIHKFINTPTKPQI
ALSPTRSDGVSINDLWAQEEMDTLYWYFVQSKKHKDIVGHIIKQIKDSGQKSKSRMAVIQ
QLLQQDIISLVEYDDLMKFEDSQYEREAKTSGISNTIEESGFSENSDISVNNQPDDIKVL
RDRLLKENKGMLVTWLQRVLIESAFIKLKMYSINEDFFELSKQSIMEPVPYHCILKKQSI
PLVPYNSEQHKILVYQPFVLLLHKLGFHLPADANKLFVRIPEFWTPEILLQVAEKLGPIS
KKNLKFDIDRLQKEKSIAIAIDEQTTSQQESSFNENSVSESSLTCNQPSWLQMVVQTKST
AERMVLSQLPKLMVKTSPAEIVTKHSFLQPSAPKKQSATNVECDMQSSYGENDSPLHDEV
IDACETNSAASSNLTRMYVSGSED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g14796.t1 MobiDBLite mobidb-lite consensus disorder prediction 242 346 -
7 g14796.t1 MobiDBLite mobidb-lite consensus disorder prediction 244 345 -
5 g14796.t1 MobiDBLite mobidb-lite consensus disorder prediction 398 451 -
6 g14796.t1 MobiDBLite mobidb-lite consensus disorder prediction 398 469 -
3 g14796.t1 PANTHER PTHR22940 TIMEOUT/TIMELESS-2 2 1059 8.4E-296
4 g14796.t1 PANTHER PTHR22940:SF5 PROTEIN TIMELESS 2 1059 8.4E-296
1 g14796.t1 Pfam PF04821 Timeless protein 23 275 3.5E-37
2 g14796.t1 Pfam PF05029 Timeless PAB domain 900 1009 3.4E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values