General information for g14845.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Molybdenum cofactor synthesis protein cinnamon.
Parent gene
- The parent gene g14845 is located on chr_4: 2647484..2648172 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14845 | g14845.t2 | TSS | g14845.t2 | 2645756 | 2645756 |
| chr_4 | g14845 | g14845.t2 | isoform | g14845.t2 | 2645856 | 2646619 |
| chr_4 | g14845 | g14845.t2 | exon | g14845.t2.exon1 | 2645856 | 2645886 |
| chr_4 | g14845 | g14845.t2 | cds | g14845.t2.CDS1 | 2645856 | 2645886 |
| chr_4 | g14845 | g14845.t2 | exon | g14845.t2.exon2 | 2645937 | 2646122 |
| chr_4 | g14845 | g14845.t2 | cds | g14845.t2.CDS2 | 2645937 | 2646122 |
| chr_4 | g14845 | g14845.t2 | exon | g14845.t2.exon3 | 2646178 | 2646310 |
| chr_4 | g14845 | g14845.t2 | cds | g14845.t2.CDS3 | 2646178 | 2646310 |
| chr_4 | g14845 | g14845.t2 | exon | g14845.t2.exon4 | 2646405 | 2646619 |
| chr_4 | g14845 | g14845.t2 | cds | g14845.t2.CDS4 | 2646405 | 2646618 |
| chr_4 | g14845 | g14845.t2 | TTS | g14845.t2 | NA | NA |
Sequences
>g14845.t2 Gene=g14845 Length=565
ATGGTAGATTTTACATATGGAATCATAACAATTTCCGATCGGTGTTTTCGTGGTGAGACA
AAAGATGAAAGCGGACCAAAAATCAAGTATCTTTTACAAGATGAATATAATGCCCATAAC
ATCAAACAAGAAATCATTCCAGACGATCAAAATAAAATTGAAGAAATTTTAATCCTTTAT
TCTGATGTTTTAAAAATTAATTGTATTTTTACAACAGGTGGAACTGGGTGTTCTCCTAGA
GATGTCACACCAGAAGCAACGAGAAAAATTATTCATAAAGAATTTCCGCAACTTTCAATG
GTTATGCTTTTAGAAGGTTTAAGAAAGACTGAATTTGCTGCACTTACGAGACTGATCTGT
GGAATTCGCAACAATTCACTCATTATAAATTTCCCAGGCAGTGTCAAAGCAGTAACTGAA
AGTTTCAATGCTATTAAACGCCTGATTCCACATGCAGTTGACTTAATTTGTGACATAAAA
GATAAAACTGAATCTGTTCATAAGCAAATTCAATCGGGAACTTCCAAAAATGCTACAAAT
GATTTTTATAGAGAAATTAAAGAAA
>g14845.t2 Gene=g14845 Length=188
MVDFTYGIITISDRCFRGETKDESGPKIKYLLQDEYNAHNIKQEIIPDDQNKIEEILILY
SDVLKINCIFTTGGTGCSPRDVTPEATRKIIHKEFPQLSMVMLLEGLRKTEFAALTRLIC
GIRNNSLIINFPGSVKAVTESFNAIKRLIPHAVDLICDIKDKTESVHKQIQSGTSKNATN
DFYREIKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14845.t2 | CDD | cd00886 | MogA_MoaB | 4 | 156 | 0 |
| 5 | g14845.t2 | Gene3D | G3DSA:3.40.980.10 | Molybdenum cofactor biosynthesis proteins | 2 | 182 | 0 |
| 2 | g14845.t2 | PANTHER | PTHR43764 | MOLYBDENUM COFACTOR BIOSYNTHESIS | 4 | 163 | 0 |
| 1 | g14845.t2 | Pfam | PF00994 | Probable molybdopterin binding domain | 7 | 150 | 0 |
| 4 | g14845.t2 | SMART | SM00852 | MoCF_biosynth_3a | 7 | 152 | 0 |
| 3 | g14845.t2 | SUPERFAMILY | SSF53218 | Molybdenum cofactor biosynthesis proteins | 5 | 157 | 0 |
| 6 | g14845.t2 | TIGRFAM | TIGR00177 | molyb_syn: molybdenum cofactor synthesis domain | 5 | 146 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K03831 (molybdopterin adenylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed