General information for g14967.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Membrane-bound alkaline phosphatase.
Parent gene
- The parent gene g14967 is located on chr_4: 3286922..3289102 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14967 | g14967.t2 | TSS | g14967.t2 | 3285909 | 3285909 |
| chr_4 | g14967 | g14967.t2 | isoform | g14967.t2 | 3285947 | 3286922 |
| chr_4 | g14967 | g14967.t2 | exon | g14967.t2.exon1 | 3285947 | 3286377 |
| chr_4 | g14967 | g14967.t2 | cds | g14967.t2.CDS1 | 3286179 | 3286377 |
| chr_4 | g14967 | g14967.t2 | exon | g14967.t2.exon2 | 3286470 | 3286574 |
| chr_4 | g14967 | g14967.t2 | cds | g14967.t2.CDS2 | 3286470 | 3286574 |
| chr_4 | g14967 | g14967.t2 | exon | g14967.t2.exon3 | 3286639 | 3286845 |
| chr_4 | g14967 | g14967.t2 | cds | g14967.t2.CDS3 | 3286639 | 3286845 |
| chr_4 | g14967 | g14967.t2 | exon | g14967.t2.exon4 | 3286910 | 3286922 |
| chr_4 | g14967 | g14967.t2 | cds | g14967.t2.CDS4 | 3286910 | 3286920 |
| chr_4 | g14967 | g14967.t2 | TTS | g14967.t2 | NA | NA |
Sequences
>g14967.t2 Gene=g14967 Length=756
ATGAAATTTGTTATTTTCTTTTCTACTTTGGTACTTTATGTACTTGCTACACCTAGAAAA
TATCATTATGGTAAATTTTGTCATTAAAACATTGTTGCAATTTTGAAATTAAAAAAATTA
GAAAAATTTCCAAAAAATAGATTTTTACTAAAATTTATTAATTTTCTGTCCTTTAAATTC
TAATAAAGTTCCAACCGAGCAATTTCAAAGTGATGACGTTCCTGATAATGAAATGCATCC
AGATTTCCATGATGATGAAGAATTCATGAATAAAAAATTCAAAGCAATCAGAGCTGAAGA
ATTGACAAAAGAATTTTGGATGGAACAAGGAAAAGATTTCATTGAACAACAATTGAGCAA
ATATCCAAATACAAAAAGAGCCAAAAATATTTTATTTTTCCTTGGTGATGGCATGGGTCA
TTCGACTGTTGCTGCTGCAAGAATGGCAATGGGAAATGAAAATATGCAATTAAAATTTGA
AGAATTTCCTTGGGTTGCAAGTTCTAAAACATTTTGTGTTGATGAACAAACAGCAGATTC
AGCATGTTCTGCAACTGCCTATCTTTCTGGTGTAAAAGGCAACAGTATGACAATTGGTGT
TAATGGAAATATGAAATATATGGATTGTGAAGATACAGGAAATCGCAATAAATATACTGA
ATCAATTGCAAAATGGGCACAAGATGCTGGTAAAGCTACTGGAGTTGTTACTACTACACG
AATCACTCATGCAAGTCCAGCAGGTGTTTATGCACA
>g14967.t2 Gene=g14967 Length=174
MHPDFHDDEEFMNKKFKAIRAEELTKEFWMEQGKDFIEQQLSKYPNTKRAKNILFFLGDG
MGHSTVAAARMAMGNENMQLKFEEFPWVASSKTFCVDEQTADSACSATAYLSGVKGNSMT
IGVNGNMKYMDCEDTGNRNKYTESIAKWAQDAGKATGVVTTTRITHASPAGVYA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14967.t2 | Gene3D | G3DSA:3.40.720.10 | Alkaline Phosphatase | 19 | 174 | 0 |
| 2 | g14967.t2 | PANTHER | PTHR11596 | ALKALINE PHOSPHATASE | 17 | 174 | 0 |
| 3 | g14967.t2 | PANTHER | PTHR11596:SF85 | AT01495P-RELATED | 17 | 174 | 0 |
| 4 | g14967.t2 | PRINTS | PR00113 | Alkaline phosphatase signature | 50 | 70 | 0 |
| 6 | g14967.t2 | PRINTS | PR00113 | Alkaline phosphatase signature | 100 | 115 | 0 |
| 5 | g14967.t2 | PRINTS | PR00113 | Alkaline phosphatase signature | 149 | 169 | 0 |
| 1 | g14967.t2 | Pfam | PF00245 | Alkaline phosphatase | 50 | 174 | 0 |
| 7 | g14967.t2 | SUPERFAMILY | SSF53649 | Alkaline phosphatase-like | 21 | 174 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
| GO:0016791 | phosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed