Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Balbiani ring protein 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15087 g15087.t1 isoform g15087.t1 3858336 3861141
chr_4 g15087 g15087.t1 exon g15087.t1.exon1 3858336 3858375
chr_4 g15087 g15087.t1 cds g15087.t1.CDS1 3858336 3858375
chr_4 g15087 g15087.t1 exon g15087.t1.exon2 3858433 3858630
chr_4 g15087 g15087.t1 cds g15087.t1.CDS2 3858433 3858630
chr_4 g15087 g15087.t1 exon g15087.t1.exon3 3858697 3858840
chr_4 g15087 g15087.t1 cds g15087.t1.CDS3 3858697 3858840
chr_4 g15087 g15087.t1 exon g15087.t1.exon4 3859018 3859060
chr_4 g15087 g15087.t1 cds g15087.t1.CDS4 3859018 3859060
chr_4 g15087 g15087.t1 exon g15087.t1.exon5 3859116 3859183
chr_4 g15087 g15087.t1 cds g15087.t1.CDS5 3859116 3859183
chr_4 g15087 g15087.t1 exon g15087.t1.exon6 3859369 3859512
chr_4 g15087 g15087.t1 cds g15087.t1.CDS6 3859369 3859512
chr_4 g15087 g15087.t1 exon g15087.t1.exon7 3859570 3860850
chr_4 g15087 g15087.t1 cds g15087.t1.CDS7 3859570 3860850
chr_4 g15087 g15087.t1 exon g15087.t1.exon8 3860906 3861141
chr_4 g15087 g15087.t1 cds g15087.t1.CDS8 3860906 3861141
chr_4 g15087 g15087.t1 TSS g15087.t1 NA NA
chr_4 g15087 g15087.t1 TTS g15087.t1 NA NA

Sequences

>g15087.t1 Gene=g15087 Length=2154
ATGAAAACACAAAATTTAATTTTTAATTTGCTCATTTTTAGTCTAAATGTGCAAAATTAT
AATGCGCAGATAATTGGACAAGTAACAACGGGACCAATTTTCGATCCATGTCATACAACT
GCTATACCAAATTGTCCACCTCCAAAGACATTTTGGAACATTAATGTTTGTCAATGCACA
TGTGACCCAAATATTTATTGTCCTCCACCTTTTATTTTTAATAATATTACATGCCAATGT
GAATGTCCCATAAATCTACCATGTCCACCAAATCAGTTTTTTGATCCTTTGACATGTACA
TGTCATTGTAAAGATGATTGTTTGAATCAACCTTGGACAATGTGTGCGAAACCACAGTTA
TGGAATAATAAAACCTGCTCATGCTATTGTCCTCAGATGACATTTTGTAAATCATATCAA
TTTTGGAATTATGATACTTGCAGTTGTGAATGCAAAAATAAACAAATCAAATGTTGCCCA
ACATATGGAAAAATATTCGATCCATTAGTTTGTCAATGTAGATGTCCACGTCATTTTCCA
TGTCCTATTAATAAAATTTGGAATGAAGATATATGCAAATGTGTTTGCCCTGTAGTTTAT
CCTTGCAGATTCCCACATGTGTGGAATGATACACTTTGCAGATGTGCATGTCCATACATA
GTTTGTCCAAAAAATTATATTCAAGATCCGTTCACTTGTAAATGTGTCTGTAATCAAGCA
CTGTCAAAAAGTTGTAAACTTCCAAAAACATATTGGGATCAAAAAAAATGCAATTGTTCA
TGCCCAATTGAATGTGCTCCAGGTCGTGTTTTAAATGAGATTAATTGTCATTGTGATTGT
GATCCAGCAATCACTTGTGACACAAACTTTATTAAAAATGCAACAAATTGTAATTGTACT
TGTAATCAAACATTGTCAACTTCTTGCAACACAACACTACACCAAAGGTGGAATCCTGAT
CTTTGTAAATGTGAATGCATCAAAGCTAATCCTGATGGAACGCTAATTTGTACAGGAAAT
TTTATTCAAGATTCGAAAAATTGTAGTTGTGTATGTGATCAGTCATTGGCAACTTCTTGT
AATGGCACATGGGATTCAATCAATTGTAAATGTAATACAAATCCATGTGATACTCCATGT
CCTCCAAATTTCATCCATGATGCTGCCTGCAATTGTACTTGTAACCAAACATTACAAAGT
ATTTGTAATACAACAACTCAGTTCTTTAATTTGACTAGTTGTCAATGCGAATGCATTAAA
GTGAAACCTGATGGAACGCTGATTTGTACAGGAAATTTCATTCAAGATCCTGTTTCTTGT
AAATGTTTTTGTGATCCAGTAAAAGAGAGAATTTGCTTGTCACAGCCAAATCATTCATGG
AATTCAACCATCTGTAATTGCAGCTGTATACCAGTGCAATGTCCTGTTGGAACAATTCAA
GATCTTACTACATGTAATTGTATTCCTTGTCCCCAGTTAAATTGTTCAACGATTCAAATT
TTTAATCCTGACATATGTACTTGCATGTGCGATCCAGCAATCACTTGTTCCATAAACTTT
ATTAAAGATCCGAAAAATTGTAGTTGCGTATGTGATCAGTCATTGGCAACTTCTTGTAAT
GGTACATGGGATTCAATCAATTGCAAATGTAATTCAAATCCATGTGATACTCCATGTCCT
TCGAATTTCATTCATGATGCTGCCTGTAATTGTATTTGTAATCAAACATTGTCAACTTCT
TGTAACACCACACTTCACCAAAGGTGGAATCCTGATCTTTGTAAATGTGAATGCATCAAA
GCTAATCCTGATGGAACGCCAATTTGTACAGGAAATTTCATTCAAGATCCGAAAAATTGT
AGTTGCGTATGTCCTTTATTGACTTGTACACAACCTTTGATTTATAACCAAACATCTTGT
CAATGCGTATGTTCTAAGCCATGCCCAGTAAATTATATTCAAGATCCTGCATTGTGCACT
TGTACTTGTAATGAGAAGCTTGTAGCATCAAACTGTGATTTCAACACTCATGTTTTTAAT
TTAGCTTCATGCAGCTGTGACTGCAAACCGACTGGATTCGCATGTCCATTTGGAACTATT
TTAGATCCTATCAATTGTAAAGATTGCGTTGTTGTTCCTCCTAATCCTACATAA

>g15087.t1 Gene=g15087 Length=717
MKTQNLIFNLLIFSLNVQNYNAQIIGQVTTGPIFDPCHTTAIPNCPPPKTFWNINVCQCT
CDPNIYCPPPFIFNNITCQCECPINLPCPPNQFFDPLTCTCHCKDDCLNQPWTMCAKPQL
WNNKTCSCYCPQMTFCKSYQFWNYDTCSCECKNKQIKCCPTYGKIFDPLVCQCRCPRHFP
CPINKIWNEDICKCVCPVVYPCRFPHVWNDTLCRCACPYIVCPKNYIQDPFTCKCVCNQA
LSKSCKLPKTYWDQKKCNCSCPIECAPGRVLNEINCHCDCDPAITCDTNFIKNATNCNCT
CNQTLSTSCNTTLHQRWNPDLCKCECIKANPDGTLICTGNFIQDSKNCSCVCDQSLATSC
NGTWDSINCKCNTNPCDTPCPPNFIHDAACNCTCNQTLQSICNTTTQFFNLTSCQCECIK
VKPDGTLICTGNFIQDPVSCKCFCDPVKERICLSQPNHSWNSTICNCSCIPVQCPVGTIQ
DLTTCNCIPCPQLNCSTIQIFNPDICTCMCDPAITCSINFIKDPKNCSCVCDQSLATSCN
GTWDSINCKCNSNPCDTPCPSNFIHDAACNCICNQTLSTSCNTTLHQRWNPDLCKCECIK
ANPDGTPICTGNFIQDPKNCSCVCPLLTCTQPLIYNQTSCQCVCSKPCPVNYIQDPALCT
CTCNEKLVASNCDFNTHVFNLASCSCDCKPTGFACPFGTILDPINCKDCVVVPPNPT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g15087.t1 PANTHER PTHR11633:SF1 LD28763P 101 178 2.3E-34
6 g15087.t1 PANTHER PTHR11633 PLATELET-DERIVED GROWTH FACTOR 101 178 2.3E-34
5 g15087.t1 PANTHER PTHR11633:SF1 LD28763P 143 198 2.3E-34
10 g15087.t1 PANTHER PTHR11633 PLATELET-DERIVED GROWTH FACTOR 143 198 2.3E-34
2 g15087.t1 PANTHER PTHR11633:SF1 LD28763P 171 246 2.3E-34
7 g15087.t1 PANTHER PTHR11633 PLATELET-DERIVED GROWTH FACTOR 171 246 2.3E-34
4 g15087.t1 PANTHER PTHR11633:SF1 LD28763P 291 373 2.3E-34
9 g15087.t1 PANTHER PTHR11633 PLATELET-DERIVED GROWTH FACTOR 291 373 2.3E-34
3 g15087.t1 PANTHER PTHR11633:SF1 LD28763P 567 646 2.3E-34
8 g15087.t1 PANTHER PTHR11633 PLATELET-DERIVED GROWTH FACTOR 567 646 2.3E-34
11 g15087.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 22 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values