General information for g15100.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15100 is located on chr_4: 3904921..3906865 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15100 | g15100.t1 | isoform | g15100.t1 | 3904921 | 3906865 |
| chr_4 | g15100 | g15100.t1 | exon | g15100.t1.exon1 | 3904921 | 3905383 |
| chr_4 | g15100 | g15100.t1 | cds | g15100.t1.CDS1 | 3904921 | 3905383 |
| chr_4 | g15100 | g15100.t1 | exon | g15100.t1.exon2 | 3905437 | 3906030 |
| chr_4 | g15100 | g15100.t1 | cds | g15100.t1.CDS2 | 3905437 | 3906030 |
| chr_4 | g15100 | g15100.t1 | exon | g15100.t1.exon3 | 3906090 | 3906865 |
| chr_4 | g15100 | g15100.t1 | cds | g15100.t1.CDS3 | 3906090 | 3906865 |
| chr_4 | g15100 | g15100.t1 | TSS | g15100.t1 | NA | NA |
| chr_4 | g15100 | g15100.t1 | TTS | g15100.t1 | NA | NA |
Sequences
>g15100.t1 Gene=g15100 Length=1833
ATGACAATTTCTATCTCACTATTTTCAATTCTTGTGCTGGCAATAATTGTAAAATGTGAA
AAGGAAAAAATACAAAGTGATTTATTTTCAGCTGCAAATGAAATTTTATCATCCCAAAGG
AAAGCAACTGCATTGAATTTTATCATTGCTTTCAACAATGAGACAGTTGAGAAAGAATAT
GGAATATTGATCAATGATTTGATAATAAAATCAAACAGTTGTGCAGTTTATATTGAACAT
GCGGATATTATCAGTCAACGTCATCGACTTTTCAATGTTTTTATTGTGGAAAATTTGAAA
TCCTTTGATCTCATGTACACTAAAATATCCTCGGATACATTCGTGATTGACGGCATCTAT
CTCATTATTTTCATCGACAACATCAACATGTCCGATATTGAGGTAGTTACAAGACGCTTA
TGGAATCTGTTCATCTACAATGCCAATTTCCTTCTTTATGATAGTCAAGAAATCAATCTT
ATAACATTTATGCCCTTCTCGAAAGAAATGAATTGTGGAAATACAAAACCAAAAATAATT
AATCAATATGTCAATGGATCATTTCGATGGCCTGAGATTCAGCACTATCCAGAAAAATTG
ACTAATTTATATCAATGTCCAATAAAAGTTGTGACATTCAATGCTCCACCTATGATAATG
ATAAAGTACTCAAATGATTCATTTGAATTACATGGAGTTGATGGTGAAATGATGACTGTA
CTTGCAAAAGAACTAAATTTTAAAATTGATCTACATCATATTTCTGACTTAATTAGATGG
GGTTCATTAGTAAATGGGACAAGCACTGGAGCTATGCGAATGGTCATCAATAACGAAGTA
GATCTTACAGTTGGAATGTATGTAATCTCAAATCAAAGGTCAAAATTCATGACAAGCTCT
GAATTTTACTACACAGTTCCGTTTATTCTTGTTGTTCCACCGGGATCAACTATGACTTCA
TTAAAAAAACTTTTCAGGCCATTTCAATTACTTGTTTGGATTCTTTTGCTTCTGATTTTT
ATCATTGCTTTCAGTACTGTGATTATAATAAGATTTCAAAGTAAATCAGTTCAAGATTTT
GTATTTGGAAAAAATAACAGGTCGCCTATGTTGAATATTTTAAATGGTTTTTTTGGCGGT
ACACAAGCAAGTTTACCAAAGCGTAATTTTGCACGATATTTGCTTATGATGTATTTAATG
TTATGTTTGGTAAAAAGATCACTTTATCAGGGTGCACTTTTTCAATTTTTGCAAAAAGAT
GATCGAAATAGTGAAATTCAATCAATAGATGAGTTAGTTGAAAAAGATTTAAAAGTTTAT
ATGCTACCATCTTCATTGGAACATACACAAAATATGAAATTTAAAAATCAACGACGAGCA
GTGAATTCAACAATTTTATCACAAAAGCTAATGGAAACATTAAGTCCGTTATCGCAGCAC
GCTGTATCAAGTTCCCTCGAGCAAATTCTTTACTACAACAAATTAAATTACAAAAACAAC
ACATTGACAGTGTGTCGAGAGCATCTTTTTACATTTCAATATGGCATTTATTTTCGCAAG
AATTCTTACCTTACAAGAATATTCAATAAAAAAATTTCGCTCTTCAAGTCGGCTGGATTA
ATTGACTTTTGGTCGTCAGATTTCATTAGCAATAAATACCTTAATATGAAAATTGATGAT
GATGGTCCGAGGAAAATTAATATGGAACATTTGTTAGGCAGTTTTGAACTATTTGTTGCA
GGCGCTCTAATAAGCATCATCATTTTCATATTTGAAGTTTTAGCTGTAAAATTTAGATTT
AGACCAATGCAGACATTTTTCGAGTTTTTTTGA
>g15100.t1 Gene=g15100 Length=610
MTISISLFSILVLAIIVKCEKEKIQSDLFSAANEILSSQRKATALNFIIAFNNETVEKEY
GILINDLIIKSNSCAVYIEHADIISQRHRLFNVFIVENLKSFDLMYTKISSDTFVIDGIY
LIIFIDNINMSDIEVVTRRLWNLFIYNANFLLYDSQEINLITFMPFSKEMNCGNTKPKII
NQYVNGSFRWPEIQHYPEKLTNLYQCPIKVVTFNAPPMIMIKYSNDSFELHGVDGEMMTV
LAKELNFKIDLHHISDLIRWGSLVNGTSTGAMRMVINNEVDLTVGMYVISNQRSKFMTSS
EFYYTVPFILVVPPGSTMTSLKKLFRPFQLLVWILLLLIFIIAFSTVIIIRFQSKSVQDF
VFGKNNRSPMLNILNGFFGGTQASLPKRNFARYLLMMYLMLCLVKRSLYQGALFQFLQKD
DRNSEIQSIDELVEKDLKVYMLPSSLEHTQNMKFKNQRRAVNSTILSQKLMETLSPLSQH
AVSSSLEQILYYNKLNYKNNTLTVCREHLFTFQYGIYFRKNSYLTRIFNKKISLFKSAGL
IDFWSSDFISNKYLNMKIDDDGPRKINMEHLLGSFELFVAGALISIIIFIFEVLAVKFRF
RPMQTFFEFF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g15100.t1 | Gene3D | G3DSA:3.40.190.10 | - | 231 | 564 | 7.8E-38 |
| 9 | g15100.t1 | Gene3D | G3DSA:3.40.190.10 | - | 307 | 514 | 7.8E-38 |
| 8 | g15100.t1 | Gene3D | G3DSA:1.10.287.70 | - | 316 | 592 | 7.8E-38 |
| 2 | g15100.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 155 | 601 | 3.3E-81 |
| 3 | g15100.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 155 | 601 | 3.3E-81 |
| 1 | g15100.t1 | Pfam | PF00497 | Bacterial extracellular solute-binding proteins, family 3 | 211 | 539 | 1.6E-7 |
| 16 | g15100.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 17 | g15100.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 18 | g15100.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 23 | g15100.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 15 | g15100.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 301 | - |
| 20 | g15100.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 302 | 321 | - |
| 11 | g15100.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 322 | 329 | - |
| 19 | g15100.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 330 | 352 | - |
| 14 | g15100.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 353 | 389 | - |
| 22 | g15100.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 409 | - |
| 12 | g15100.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 410 | 573 | - |
| 21 | g15100.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 574 | 596 | - |
| 13 | g15100.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 597 | 610 | - |
| 6 | g15100.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 206 | 550 | 1.28E-26 |
| 7 | g15100.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 4 | g15100.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 330 | 352 | - |
| 5 | g15100.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 574 | 596 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed