General information for g15101.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lipase 3.
Parent gene
- The parent gene g15101 is located on chr_4: 3907995..3910274 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15101 | g15101.t1 | TSS | g15101.t1 | 3907953 | 3907953 |
| chr_4 | g15101 | g15101.t1 | isoform | g15101.t1 | 3907995 | 3910274 |
| chr_4 | g15101 | g15101.t1 | exon | g15101.t1.exon1 | 3907995 | 3908572 |
| chr_4 | g15101 | g15101.t1 | cds | g15101.t1.CDS1 | 3907995 | 3908572 |
| chr_4 | g15101 | g15101.t1 | exon | g15101.t1.exon2 | 3908628 | 3908661 |
| chr_4 | g15101 | g15101.t1 | cds | g15101.t1.CDS2 | 3908628 | 3908661 |
| chr_4 | g15101 | g15101.t1 | exon | g15101.t1.exon3 | 3908717 | 3908896 |
| chr_4 | g15101 | g15101.t1 | cds | g15101.t1.CDS3 | 3908717 | 3908896 |
| chr_4 | g15101 | g15101.t1 | exon | g15101.t1.exon4 | 3909601 | 3909828 |
| chr_4 | g15101 | g15101.t1 | cds | g15101.t1.CDS4 | 3909601 | 3909828 |
| chr_4 | g15101 | g15101.t1 | exon | g15101.t1.exon5 | 3910131 | 3910274 |
| chr_4 | g15101 | g15101.t1 | cds | g15101.t1.CDS5 | 3910131 | 3910274 |
| chr_4 | g15101 | g15101.t1 | TTS | g15101.t1 | NA | NA |
Sequences
>g15101.t1 Gene=g15101 Length=1164
ATGCGGTTTTTAATTTTTGTGCTAATTTTTTTTAAAGTTACTTCTTCAAAGTTAATAAAA
GATGATGAAGTAGTGAAATTTGTAAAAGGTCATGGATATTTGTCAGAAGCACATGAAGTT
GTTACTGATGACAATTATATCCTACGAATACATCGAGTTGCACGCAAAAATGGTATCGAT
TCATCCAAAAAGCCAGTTTTTTTAATGCACAGCGCTTTCTCAAATTCTCTCTATTACTTA
AACACTCCAAATATATCGGCTGGTTTCTTTTTTGCTGATGAAGGTTACGATGTTTGGCTT
GGAAACGTTCGTGGTAGCAAATATGCAACAAAGCACAAATATCTCGATACAGAATCATTG
AAATATTGGCAATTTAGTTTTCATGAAATGGGTGTTTATGATCTTAAAACTATGATTGAC
TACACATTGCAAATGACTGGAAGTGACAGCTGTTTTTATATTGCTCATTCACAAGCTTGC
ACACAACAACTTGTATTTTTATCAATGTTGCCTGAATATAACAAGAAAATTATTCAAAGT
CATTTGATGTCACCAATTGGAGCTATGGCTAATCCTAGATTTCCATTAACTAATCTTGCA
CCGCTTTATTTGACAATAGCAAAAATTTTAAATAAACTTCCATATGTTGACTTCAAGCCA
TTTAATGTCATTGGTGGTGAATTGAGTTACATATTTTGTAGTCGAGGAATTGTTCTTGCC
ATGTGCCAGCTTTTTAATTTTTTTCTGCTAGGTGGCGATCCAATGGCTCCGCTCATGCCG
AATACTGATCCGCATATTTACCAAACAATTTTTCCAACTTTATCACCTCGAACTGGTGTG
CAACAGGTGACTCATTATGTTCAAACAATCATGACAAAAGAATTTCGAGCTTTTGATTAT
GGAGAAGAAAAGAATTTAAAAATTTATGGAACTAAAAAGCCGCCTCTGTATCCTTTAAAT
CGAATTACTAGTCCAATTTACCTTTATGCTGGAGAATATGATATGATTTTTAGAAGACCA
GACACTGAACTACTTTTACCACACATCAAAGATGTTCACTATGAAATCATTCCCAAATAC
AATCACATTGATTTTATATATGCACGTGATGCCCAAGCTAAAATGTACAAAAAAATTCAA
CACATAATGGAAAGAGGGAGATAA
>g15101.t1 Gene=g15101 Length=387
MRFLIFVLIFFKVTSSKLIKDDEVVKFVKGHGYLSEAHEVVTDDNYILRIHRVARKNGID
SSKKPVFLMHSAFSNSLYYLNTPNISAGFFFADEGYDVWLGNVRGSKYATKHKYLDTESL
KYWQFSFHEMGVYDLKTMIDYTLQMTGSDSCFYIAHSQACTQQLVFLSMLPEYNKKIIQS
HLMSPIGAMANPRFPLTNLAPLYLTIAKILNKLPYVDFKPFNVIGGELSYIFCSRGIVLA
MCQLFNFFLLGGDPMAPLMPNTDPHIYQTIFPTLSPRTGVQQVTHYVQTIMTKEFRAFDY
GEEKNLKIYGTKKPPLYPLNRITSPIYLYAGEYDMIFRRPDTELLLPHIKDVHYEIIPKY
NHIDFIYARDAQAKMYKKIQHIMERGR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15101.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 20 | 386 | 2.0E-99 |
| 2 | g15101.t1 | PANTHER | PTHR11005:SF127 | LIPASE-RELATED | 7 | 385 | 9.5E-91 |
| 3 | g15101.t1 | PANTHER | PTHR11005 | LYSOSOMAL ACID LIPASE-RELATED | 7 | 385 | 9.5E-91 |
| 12 | g15101.t1 | PIRSF | PIRSF000862 | Steryl_ester_lip | 3 | 387 | 4.2E-93 |
| 1 | g15101.t1 | Pfam | PF04083 | Partial alpha/beta-hydrolase lipase region | 25 | 79 | 7.2E-13 |
| 8 | g15101.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 15 | - |
| 9 | g15101.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 10 | g15101.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 11 | - |
| 11 | g15101.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 15 | - |
| 7 | g15101.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 16 | 387 | - |
| 4 | g15101.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 25 | 383 | 8.12E-43 |
| 5 | g15101.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | MF |
| GO:0006629 | lipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed