General information for g15150.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sulfotransferase 1C1.
Parent gene
- The parent gene g15150 is located on chr_4: 4136501..4137637 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15150 | g15150.t1 | isoform | g15150.t1 | 4133153 | 4137637 |
| chr_4 | g15150 | g15150.t1 | exon | g15150.t1.exon1 | 4133153 | 4133368 |
| chr_4 | g15150 | g15150.t1 | cds | g15150.t1.CDS1 | 4133153 | 4133368 |
| chr_4 | g15150 | g15150.t1 | exon | g15150.t1.exon2 | 4135955 | 4136319 |
| chr_4 | g15150 | g15150.t1 | cds | g15150.t1.CDS2 | 4135955 | 4136319 |
| chr_4 | g15150 | g15150.t1 | exon | g15150.t1.exon3 | 4136384 | 4136412 |
| chr_4 | g15150 | g15150.t1 | cds | g15150.t1.CDS3 | 4136384 | 4136412 |
| chr_4 | g15150 | g15150.t1 | exon | g15150.t1.exon4 | 4136477 | 4136667 |
| chr_4 | g15150 | g15150.t1 | cds | g15150.t1.CDS4 | 4136477 | 4136667 |
| chr_4 | g15150 | g15150.t1 | exon | g15150.t1.exon5 | 4137211 | 4137385 |
| chr_4 | g15150 | g15150.t1 | cds | g15150.t1.CDS5 | 4137211 | 4137385 |
| chr_4 | g15150 | g15150.t1 | exon | g15150.t1.exon6 | 4137444 | 4137637 |
| chr_4 | g15150 | g15150.t1 | cds | g15150.t1.CDS6 | 4137444 | 4137637 |
| chr_4 | g15150 | g15150.t1 | TTS | g15150.t1 | 4137694 | 4137694 |
| chr_4 | g15150 | g15150.t1 | TSS | g15150.t1 | NA | NA |
Sequences
>g15150.t1 Gene=g15150 Length=1170
ATGGAAAACAACAAAAACAATGCAATCAAAAATCATCAAGAATCTACAACAAAACAATCA
AATGAAAAATTTCAATGTCCAGTTTGTCTTGAAAAATCATCAAAAACTGTCAGTACAAAT
TGCAATCATACTTTTTGCGTCAAATGTATTTTTAAATGGATTTTCTATTGTGTGGATGAA
ATGGACAAAATTTCCTGCCCACTGTGCCGTCAAGTGTTTCTGTTCAGTAATTCAGTGAAA
AAGAAGATCAAATCATGGAGCATATCGAAGTACTTGAAGAAATTAAAACTAAATCCAAAA
TCCAACCGGCATGTCGGAAGTTTTTGGTGGTGTCGTGTCATAATTAAGACGAAGAACCCA
AAATTCAAGGATTTTCCTCCAGCTTTGTTTGTCAAAGGCTTCTTGCAAGATTATGAGGAA
AGAGTCAAGAATTTCAAGGTCTATGAAGACGATGTTTGGCTTATTGGATTCCAAAGAAGT
GGAACAACTTTGATGCAAGAAATTATTTGGTTGATTTTGAACGATTATGACGTCGAAAAA
GCAAAATCAGCTGATACTTACAATCGAGCTCAATGGTTTGATTTCTTCAATGTTGTTCAT
AAACTTCAAGTTCAATTTCTTCCTGATCAAATTTGGACCGTGAAACCAAAAATTATTCAC
ATTCATCGAGATGTCAAAGATGTCGCCATTTCGCTCTATCACTTACGTAAAAATTCATTG
CACGATGATGTTGGAACAATGGAAGAACATTTTGAAGAAATTTTGAATGATAGAACTTGG
TATACACCATATAGAGAACATGTTCTCAACTATCAAAGAATTCCTGATTATCCAAATATT
TTGTATTTGACTTATGAAGAACTTCTTGCTGATAAAGCTGGAGTTATCAAGCAAACAGCA
AAATTCTTAAATACACCAATCACTGAAGAACAAGTCCAGAAGCTTATTGATCATTCTAAA
TTTGAGAAAATGCAAAAGAACAAAATGACAAACATGCAACACTATCATGAACTCTTCAAT
CAACTTTCGAATGACAATAAGCCAACTGATAAATTCATTCGCAAGGGAATTGTTGGAGAC
CATAAGAATGCAATGAGTGAAGAAACCATCAAGAGATTCGATGAATGGTGGGCACAAAGA
ACAACACTTAAACCTGGATACAACAAATAA
>g15150.t1 Gene=g15150 Length=389
MENNKNNAIKNHQESTTKQSNEKFQCPVCLEKSSKTVSTNCNHTFCVKCIFKWIFYCVDE
MDKISCPLCRQVFLFSNSVKKKIKSWSISKYLKKLKLNPKSNRHVGSFWWCRVIIKTKNP
KFKDFPPALFVKGFLQDYEERVKNFKVYEDDVWLIGFQRSGTTLMQEIIWLILNDYDVEK
AKSADTYNRAQWFDFFNVVHKLQVQFLPDQIWTVKPKIIHIHRDVKDVAISLYHLRKNSL
HDDVGTMEEHFEEILNDRTWYTPYREHVLNYQRIPDYPNILYLTYEELLADKAGVIKQTA
KFLNTPITEEQVQKLIDHSKFEKMQKNKMTNMQHYHELFNQLSNDNKPTDKFIRKGIVGD
HKNAMSEETIKRFDEWWAQRTTLKPGYNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g15150.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 1 | 96 | 6.4E-16 |
| 9 | g15150.t1 | Gene3D | G3DSA:3.40.50.300 | - | 115 | 384 | 1.4E-71 |
| 3 | g15150.t1 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 134 | 387 | 2.1E-63 |
| 4 | g15150.t1 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 134 | 387 | 2.1E-63 |
| 1 | g15150.t1 | Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 26 | 69 | 4.1E-7 |
| 2 | g15150.t1 | Pfam | PF00685 | Sulfotransferase domain | 150 | 380 | 4.4E-48 |
| 8 | g15150.t1 | ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 41 | 50 | - |
| 11 | g15150.t1 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 26 | 70 | 12.843 |
| 7 | g15150.t1 | SMART | SM00184 | ring_2 | 26 | 69 | 6.3E-7 |
| 5 | g15150.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 19 | 76 | 2.43E-14 |
| 6 | g15150.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 124 | 379 | 6.45E-65 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046872 | metal ion binding | MF |
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed