Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sulfotransferase family cytosolic 1B member 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15151 g15151.t1 TSS g15151.t1 4135952 4135952
chr_4 g15151 g15151.t1 TTS g15151.t1 4137694 4137694
chr_4 g15151 g15151.t1 isoform g15151.t1 4140681 4142303
chr_4 g15151 g15151.t1 exon g15151.t1.exon1 4140681 4141006
chr_4 g15151 g15151.t1 cds g15151.t1.CDS1 4140681 4141006
chr_4 g15151 g15151.t1 exon g15151.t1.exon2 4141072 4141354
chr_4 g15151 g15151.t1 cds g15151.t1.CDS2 4141072 4141354
chr_4 g15151 g15151.t1 exon g15151.t1.exon3 4141846 4142020
chr_4 g15151 g15151.t1 cds g15151.t1.CDS3 4141846 4142020
chr_4 g15151 g15151.t1 exon g15151.t1.exon4 4142077 4142303
chr_4 g15151 g15151.t1 cds g15151.t1.CDS4 4142077 4142303

Sequences

>g15151.t1 Gene=g15151 Length=1011
ATGGAGCATATCGAAGTACTTGAAGAAATTAAAACTAAAATCCAAAATCCAACCGGCATG
TCGGAAGTTTTTGGTGATCGTGTCATAATTAAGACGAAGAACCCAAAATTCAAGGATTTT
CCTCCAGCTTTGTTTGTCAAAGGCTTCTTGCAAGATTATGAGGAAAGAGTCAAGAATTTC
AAGGTCTATGAAGATGATGTTTGGCTTATTGGATTTCCAAGAAGTGGAACAACTTTGATG
CAAGAAATTATTTGGTTGATTTTGAACGATTATGATGTCGAAAAAGCAAAATCAGCTGAT
ACTTACAATCGAGCTCAATGGTTTGACTTTTTCAATGTTCTTCATAAAATCCAGGGTGTC
GATGCTGATTACATGGACAAAATGCCACGCCCACGTATTTTCAAATCCCATTTACCAGTT
CAATTTCTTCCTGATCAAATTTGGACCGTGAAACCAAAAATTATTCACATTCATCGAGAT
GTCAAAGATGTCGCCATTTCGCTCTATCACTTACGTAAAAATTCATTGCACGATGATGTT
GGAACAATGGAAGAACATTTTGAACAAATTTTGAATGATAGAACTTGGTATACACCATAC
AGAGAACATGTTCTCAACTATCAAAGAATTCCTGATTATCCAAATATTTTGTATTTGACT
TATGAAGAACTTCTTGCTGATAAAGCTGGAGTCATCAAGCAAACAGCGAAATTCTTAAAT
ACACCAATCACTGAAGAACAAGTCCAGAAACTTATTGACCATTCTAAATTTGAGAAAATG
CAGAAAAATAAAACAACAAACATGCAACACTATCATGAACTCTTCAATCAACTTTCGAAT
GACAATAAGCCAACTGATAACTTCATTCGCAAGGGAATTGTTGGAGACCATAAGAATGCA
ATGAGTGAAGAAACCATCAAGAGATTCGATGAATGGTGGGCACAAAGAACAACACTTAAA
CCTGGATACAANCAAGCAAACAGCGAAATTCTTAAATACACCAATCACTGA

>g15151.t1 Gene=g15151 Length=336
MEHIEVLEEIKTKIQNPTGMSEVFGDRVIIKTKNPKFKDFPPALFVKGFLQDYEERVKNF
KVYEDDVWLIGFPRSGTTLMQEIIWLILNDYDVEKAKSADTYNRAQWFDFFNVLHKIQGV
DADYMDKMPRPRIFKSHLPVQFLPDQIWTVKPKIIHIHRDVKDVAISLYHLRKNSLHDDV
GTMEEHFEQILNDRTWYTPYREHVLNYQRIPDYPNILYLTYEELLADKAGVIKQTAKFLN
TPITEEQVQKLIDHSKFEKMQKNKTTNMQHYHELFNQLSNDNKPTDNFIRKGIVGDHKNA
MSEETIKRFDEWWAQRTTLKPGYXQANSEILKYTNH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15151.t1 Gene3D G3DSA:3.40.50.300 - 29 320 0
2 g15151.t1 PANTHER PTHR11783 SULFOTRANSFERASE SULT 49 323 0
3 g15151.t1 PANTHER PTHR11783:SF180 GH11818P-RELATED 49 323 0
1 g15151.t1 Pfam PF00685 Sulfotransferase domain 65 316 0
4 g15151.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 39 315 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008146 sulfotransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed