General information for g15166.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytosolic non-specific dipeptidase.
Parent gene
- The parent gene g15166 is located on chr_4: 4213967..4214744 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15166 | g15166.t6 | TSS | g15166.t6 | 4212692 | 4212692 |
| chr_4 | g15166 | g15166.t6 | isoform | g15166.t6 | 4212807 | 4214744 |
| chr_4 | g15166 | g15166.t6 | exon | g15166.t6.exon1 | 4212807 | 4212841 |
| chr_4 | g15166 | g15166.t6 | exon | g15166.t6.exon2 | 4212945 | 4213179 |
| chr_4 | g15166 | g15166.t6 | exon | g15166.t6.exon3 | 4213530 | 4213908 |
| chr_4 | g15166 | g15166.t6 | cds | g15166.t6.CDS1 | 4213754 | 4213908 |
| chr_4 | g15166 | g15166.t6 | exon | g15166.t6.exon4 | 4213967 | 4214744 |
| chr_4 | g15166 | g15166.t6 | cds | g15166.t6.CDS2 | 4213967 | 4214744 |
| chr_4 | g15166 | g15166.t6 | TTS | g15166.t6 | 4214803 | 4214803 |
Sequences
>g15166.t6 Gene=g15166 Length=1427
ATGAGTTTGCCGGAAAAATTGGAGAAATTGTTTGGTTATATCGATCAAAACAAAGCAAAA
TACATTGAAACTTTGACTGAAGCTGTTGCGATAAAATCAGTATCAGCTTGGCCTAATTGT
CGAAATGAATGTCAACGTATGATTGATTTTGCTCAGAAAAAAATGGAAGCACTTGGAATC
AAGTGTGAACAAGTCGATATTGGCATGCAAACTTTACCTGATGGAACAACTTTGAAACTT
CCCAATGTTGTAATGGGAGTACTTGGAAATCAAAGAAGACAATTGTTGTTTATGGACATT
TAGATGTTCAACCAGCATTGAAAGAAGACGGTTGGGACACTGATCCTTTTATTCTCACTT
TAAAGGACGGTAAATTATATGGTCGTGGTTCTAGTGACGACAAAGGTCCAGTATTAGGCT
GGCTTAATGCAATTGAGGCTTATCAAAAGTTGGGACTTGATGTGCCAGTGAATTTGAAAT
TTGTTTTTGAAGGAATGGAAGAAAGTGGCTCAGAAGGTCTCGATGATCTTTTGGTTGCTC
GCAAAGATTGGTTCAAAGATGTCGATTATGTTTGCATTAGTGACAATTATTGGTTGGGCA
ATCAACATCCTTGCATCACTTATGGTCTGAGAGGCATTTGCTACTTTGGCTTAGAAATTA
CTTGTGCATCAAAAGATTTGCATTCAGGTGTCTTTGGCGGTGCTGTACATGAAGCTATGA
CTGATTTGATTCATTTAATGTCAACACTTGTTGATGTAAATGGAAAAATCTTAATTCCTG
GAATTTATGATGATGTTGCTCCATTGCTTCCAAATGAAAATGAAATTTATGAAAAAATTT
CATTCGATGTTGAAGCTTTCCGTCAAAGTGTTGGTGCACCAGGCAAATTGATGCATGACT
CAAAAACTAAATTGCTTCAGCACAGATGGCGTTATCCAAGTCTTTCATTGCATGGTGTTG
AAGGTGCTTTCTATGAGCCTGGACAAAAGACTGTAATTCCAAGAAAAGTAATTGGAAAAT
TCTCAATTCGTGCTGTCCCGAATCAAGAGCCAGAAAAGATTGAAAAACTTGTTGTTGATT
ATGTGACTCGAAAATTTGCTGAATTAAAAAGCCCAAATGAAATTAAATGTTATATGGCTC
ATGGTGGTCGACCATGGACAGAAAATCCTAACCATGAGCATTATCAAGCTGCTGTTCGTG
CAACTAAGCATGTCTATAAAGTAGAGCCTGATATGACACGTGAAGGTGGGTCAATTCCGG
TCACTCTTACTTTCCAAGAAGTTTCTGGAAAGAATGTACTGTTGCTGCCCATGGGATGTG
GTGACGATGGCGCTCACAGCCAAAACGAGAAAATTGATGTTCGCAATTATATTGAAGGAA
GCAAATTACTTGGTGCTTACTTGTATGAAGTTGCTCAAATTCAATAA
>g15166.t6 Gene=g15166 Length=310
MEESGSEGLDDLLVARKDWFKDVDYVCISDNYWLGNQHPCITYGLRGICYFGLEITCASK
DLHSGVFGGAVHEAMTDLIHLMSTLVDVNGKILIPGIYDDVAPLLPNENEIYEKISFDVE
AFRQSVGAPGKLMHDSKTKLLQHRWRYPSLSLHGVEGAFYEPGQKTVIPRKVIGKFSIRA
VPNQEPEKIEKLVVDYVTRKFAELKSPNEIKCYMAHGGRPWTENPNHEHYQAAVRATKHV
YKVEPDMTREGGSIPVTLTFQEVSGKNVLLLPMGCGDDGAHSQNEKIDVRNYIEGSKLLG
AYLYEVAQIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g15166.t6 | Coils | Coil | Coil | 309 | 310 | - |
| 7 | g15166.t6 | Gene3D | G3DSA:3.30.70.360 | - | 46 | 208 | 1.5E-58 |
| 8 | g15166.t6 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 209 | 310 | 9.1E-24 |
| 3 | g15166.t6 | PANTHER | PTHR43270 | BETA-ALA-HIS DIPEPTIDASE | 1 | 309 | 5.5E-151 |
| 4 | g15166.t6 | PANTHER | PTHR43270:SF11 | CYTOSOLIC NON-SPECIFIC DIPEPTIDASE | 1 | 309 | 5.5E-151 |
| 2 | g15166.t6 | Pfam | PF01546 | Peptidase family M20/M25/M40 | 2 | 304 | 4.0E-10 |
| 1 | g15166.t6 | Pfam | PF07687 | Peptidase dimerisation domain | 44 | 202 | 1.0E-14 |
| 5 | g15166.t6 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 2 | 308 | 9.08E-19 |
| 6 | g15166.t6 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 2 | 158 | 2.07E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed