Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 12b1, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15189 g15189.t1 isoform g15189.t1 4425052 4425581
chr_4 g15189 g15189.t1 exon g15189.t1.exon1 4425052 4425183
chr_4 g15189 g15189.t1 cds g15189.t1.CDS1 4425052 4425183
chr_4 g15189 g15189.t1 exon g15189.t1.exon2 4425312 4425581
chr_4 g15189 g15189.t1 cds g15189.t1.CDS2 4425312 4425581
chr_4 g15189 g15189.t1 TSS g15189.t1 NA NA
chr_4 g15189 g15189.t1 TTS g15189.t1 NA NA

Sequences

>g15189.t1 Gene=g15189 Length=402
ATGAAAGCAAAAATTTCACTTTTAAATTTCACTCGTGTTTTTTGTTCAATGAGAAATGCA
GATCAAAATACAAAACCATATTCGGAAGTTCCAACTGTGTCAGTTCCAAAATTTATTTTA
AGAAATTTACCTGGTGGAAAATATTATAAAAAATCTTTAAAAGAAATTCAAGAATCATTT
TATAATGAATTTGGAAATATTTTTAAATTGCCTGCAATGTTTGGCAAATCTGAAATGATT
TTTATTTACAAAGCTGATGACTTTGAAACGGCTATCAGAGCTGAAGGTATTTGGCCAGTT
CGAATAAGTCTTGATACACTGAAATATTACAGAGATTTAAAACATCCTAAAGTTTATGAA
CAAACCATGGATCAAATTGGCAAACGACAAGGTCAATTATAA

>g15189.t1 Gene=g15189 Length=133
MKAKISLLNFTRVFCSMRNADQNTKPYSEVPTVSVPKFILRNLPGGKYYKKSLKEIQESF
YNEFGNIFKLPAMFGKSEMIFIYKADDFETAIRAEGIWPVRISLDTLKYYRDLKHPKVYE
QTMDQIGKRQGQL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g15189.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 17 130 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed