General information for g15208.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phospholipase A1 member A.
Parent gene
- The parent gene g15208 is located on chr_4: 4477283..4478619 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15208 | g15208.t1 | TSS | g15208.t1 | 4477249 | 4477249 |
| chr_4 | g15208 | g15208.t1 | isoform | g15208.t1 | 4477283 | 4478619 |
| chr_4 | g15208 | g15208.t1 | exon | g15208.t1.exon1 | 4477283 | 4477325 |
| chr_4 | g15208 | g15208.t1 | cds | g15208.t1.CDS1 | 4477283 | 4477325 |
| chr_4 | g15208 | g15208.t1 | exon | g15208.t1.exon2 | 4477408 | 4477430 |
| chr_4 | g15208 | g15208.t1 | cds | g15208.t1.CDS2 | 4477408 | 4477430 |
| chr_4 | g15208 | g15208.t1 | exon | g15208.t1.exon3 | 4477505 | 4477789 |
| chr_4 | g15208 | g15208.t1 | cds | g15208.t1.CDS3 | 4477505 | 4477789 |
| chr_4 | g15208 | g15208.t1 | exon | g15208.t1.exon4 | 4477851 | 4478025 |
| chr_4 | g15208 | g15208.t1 | cds | g15208.t1.CDS4 | 4477851 | 4478025 |
| chr_4 | g15208 | g15208.t1 | exon | g15208.t1.exon5 | 4478082 | 4478163 |
| chr_4 | g15208 | g15208.t1 | cds | g15208.t1.CDS5 | 4478082 | 4478163 |
| chr_4 | g15208 | g15208.t1 | exon | g15208.t1.exon6 | 4478226 | 4478449 |
| chr_4 | g15208 | g15208.t1 | cds | g15208.t1.CDS6 | 4478226 | 4478449 |
| chr_4 | g15208 | g15208.t1 | exon | g15208.t1.exon7 | 4478513 | 4478619 |
| chr_4 | g15208 | g15208.t1 | cds | g15208.t1.CDS7 | 4478513 | 4478619 |
| chr_4 | g15208 | g15208.t1 | TTS | g15208.t1 | 4488685 | 4488685 |
Sequences
>g15208.t1 Gene=g15208 Length=939
ATGAAAAACTTTTTATCTAAAATTTTATATCTTTTCATATTTTTACACCAAGGACAAACC
TTAGTTATTGATGGTGGCATTTATTTTATTTTCTTTGGTTCAAATTCTTCTGATTATGTT
AACACAACATTCAATTATGATTTTGCAAGTTTAAAAAACACAAATTATTTTAATATGAGC
AAACCAACTGCTATTGTTAACCATGGCTGGATACACAATATACATACTTCATTTTATGTT
GCTCTAGCAGAAGCCTATTTGAGTAGAGGCGATTTTAATTATATTGCAATTGATTGGAGC
AAATACTCACGTGATATCAATTATGCTGATCTTCCCCCAACATTTAATGATCAAGCAGCT
TTAATAGTCTCAATTTTAATTCAAATGCAAACTGCTGGTTTTAATTTGACAACTTTTCAT
TTTATTGGTCATAGCTTTGGTGCTCAAATTTTTGGACGTGTTGGCTATCAATTGATTCAA
AATTACCACTTTACTCCAACTAGAATCACAGGATTTGATCCAGCTGGTCCAATGTTTGGA
AATTTCAATGAATGGCCAACTTCACCGGTTGCTTTATTGTATCCTTCACTTAATAAACTC
AATGCTAAATTTGTTGATATAATTCACACTGATCGTTATAAAATTGGTGAAGATTATTCG
GCTGGTCATATGGACATGAGCTTCTTGCGCCAAACTTACTGGAGCTTAATCAACCAGTTG
CAGCATTTTTTTTGCCCGATACACAGATTGAATATACAAAAATTTTCACTAACTTATTGT
TTCTTTCTTAAATTTTTTTACCTAATGATTTTAGATAAACTTGTCTTGGCGAGGGGGTTT
TTCTTTTGTAAGGAAAAATCAAATCAAATCTTTGTTTGGGTCCTTGGATATGAATATCGG
ACTGTGTTCTTGGATTCAGTTTGCATCATCGGCTTTTAG
>g15208.t1 Gene=g15208 Length=312
MKNFLSKILYLFIFLHQGQTLVIDGGIYFIFFGSNSSDYVNTTFNYDFASLKNTNYFNMS
KPTAIVNHGWIHNIHTSFYVALAEAYLSRGDFNYIAIDWSKYSRDINYADLPPTFNDQAA
LIVSILIQMQTAGFNLTTFHFIGHSFGAQIFGRVGYQLIQNYHFTPTRITGFDPAGPMFG
NFNEWPTSPVALLYPSLNKLNAKFVDIIHTDRYKIGEDYSAGHMDMSFLRQTYWSLINQL
QHFFCPIHRLNIQKFSLTYCFFLKFFYLMILDKLVLARGFFFCKEKSNQIFVWVLGYEYR
TVFLDSVCIIGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15208.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 20 | 232 | 8.3E-40 |
| 2 | g15208.t1 | PANTHER | PTHR11610 | LIPASE | 41 | 225 | 1.9E-35 |
| 3 | g15208.t1 | PANTHER | PTHR11610:SF164 | GH15759P-RELATED | 41 | 225 | 1.9E-35 |
| 1 | g15208.t1 | Pfam | PF00151 | Lipase | 45 | 225 | 1.3E-19 |
| 9 | g15208.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 10 | g15208.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 11 | g15208.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 13 | g15208.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 8 | g15208.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 254 | - |
| 12 | g15208.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 276 | - |
| 7 | g15208.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 277 | 312 | - |
| 4 | g15208.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 44 | 226 | 8.75E-27 |
| 5 | g15208.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed