General information for g15210.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15210 is located on chr_4: 4488070..4488628 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15210 | g15210.t1 | TSS | g15210.t1 | 4477249 | 4477249 |
| chr_4 | g15210 | g15210.t1 | isoform | g15210.t1 | 4488070 | 4488628 |
| chr_4 | g15210 | g15210.t1 | exon | g15210.t1.exon1 | 4488070 | 4488140 |
| chr_4 | g15210 | g15210.t1 | cds | g15210.t1.CDS1 | 4488070 | 4488140 |
| chr_4 | g15210 | g15210.t1 | exon | g15210.t1.exon2 | 4488203 | 4488330 |
| chr_4 | g15210 | g15210.t1 | cds | g15210.t1.CDS2 | 4488203 | 4488330 |
| chr_4 | g15210 | g15210.t1 | exon | g15210.t1.exon3 | 4488393 | 4488628 |
| chr_4 | g15210 | g15210.t1 | cds | g15210.t1.CDS3 | 4488393 | 4488628 |
| chr_4 | g15210 | g15210.t1 | TTS | g15210.t1 | 4488685 | 4488685 |
Sequences
>g15210.t1 Gene=g15210 Length=435
ATGCAGCTTATACATTCACTTTGTTCACCGGTTGCTTTATTATATCCTTCACTTAATAAA
CTCAATGCTAAATTTGTCGACATAATTCATACTGATCGTTATAAAATTGGTGAAGATTAT
TCGGCTGGTCATATGGACTTTTGGCCAAATACTGGAGCTTATCAACCAGGTTGCAGCATT
TTTTGCGATACACAGGATTATAATTGTCTTGCATGTAGTCATAATAGAGTACTAAAATAT
TACACTGAATCAATTCAATCAGGTTCTGTAAGAAAATTCAAATCAAATTTGTGTTCTGGT
CTTGGATATGATATCGGACTGTGTTTTGGTTCAGTTGCATCGATGGGCTTTTATGCTGAT
AAATATTCTGCTTATCCTGGCAATTACTATCTGTCCACTAATGATGTTTCACCATATTCA
ATTTCTAATGTCTGA
>g15210.t1 Gene=g15210 Length=144
MQLIHSLCSPVALLYPSLNKLNAKFVDIIHTDRYKIGEDYSAGHMDFWPNTGAYQPGCSI
FCDTQDYNCLACSHNRVLKYYTESIQSGSVRKFKSNLCSGLGYDIGLCFGSVASMGFYAD
KYSAYPGNYYLSTNDVSPYSISNV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g15210.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 14 | 141 | 0 |
| 2 | g15210.t1 | PANTHER | PTHR11610 | LIPASE | 18 | 140 | 0 |
| 1 | g15210.t1 | Pfam | PF00151 | Lipase | 18 | 139 | 0 |
| 3 | g15210.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 16 | 139 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed