General information for g15211.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phospholipase A1 member A.
Parent gene
- The parent gene g15211 is located on chr_4: 4489417..4490741 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15211 | g15211.t1 | isoform | g15211.t1 | 4489417 | 4490741 |
| chr_4 | g15211 | g15211.t1 | exon | g15211.t1.exon1 | 4489417 | 4489423 |
| chr_4 | g15211 | g15211.t1 | cds | g15211.t1.CDS1 | 4489417 | 4489423 |
| chr_4 | g15211 | g15211.t1 | exon | g15211.t1.exon2 | 4489508 | 4489530 |
| chr_4 | g15211 | g15211.t1 | cds | g15211.t1.CDS2 | 4489508 | 4489530 |
| chr_4 | g15211 | g15211.t1 | exon | g15211.t1.exon3 | 4489625 | 4489909 |
| chr_4 | g15211 | g15211.t1 | cds | g15211.t1.CDS3 | 4489625 | 4489909 |
| chr_4 | g15211 | g15211.t1 | exon | g15211.t1.exon4 | 4489971 | 4490145 |
| chr_4 | g15211 | g15211.t1 | cds | g15211.t1.CDS4 | 4489971 | 4490145 |
| chr_4 | g15211 | g15211.t1 | exon | g15211.t1.exon5 | 4490211 | 4490292 |
| chr_4 | g15211 | g15211.t1 | cds | g15211.t1.CDS5 | 4490211 | 4490292 |
| chr_4 | g15211 | g15211.t1 | exon | g15211.t1.exon6 | 4490348 | 4490496 |
| chr_4 | g15211 | g15211.t1 | cds | g15211.t1.CDS6 | 4490348 | 4490496 |
| chr_4 | g15211 | g15211.t1 | exon | g15211.t1.exon7 | 4490548 | 4490741 |
| chr_4 | g15211 | g15211.t1 | cds | g15211.t1.CDS7 | 4490548 | 4490741 |
| chr_4 | g15211 | g15211.t1 | TSS | g15211.t1 | NA | NA |
| chr_4 | g15211 | g15211.t1 | TTS | g15211.t1 | NA | NA |
Sequences
>g15211.t1 Gene=g15211 Length=915
ATGTACTTATATCAAGTCCAAATTGTGGTTATTGATGGTGGCATTTATTTTATTTTCTTT
GGTTCAAATTCTTCTGATTATAAAAATACAACTCTCAATTATAATTTTGCAAGTTTAAAA
AACACAAATTATTTTAATATAAGCAAACCAACTGCTATTGTTAACCATGGCTGGATACAC
AATATACGTACTTCATTTTATGTTGCTCTAGCAGAAGCCTATTTGAGTAGAGTCGATTTT
AATTATATTGCAATTGATTGGAGCAAATATTCACATGATATCAATTATCCTGAACTTCCC
CCAACATTTAATGTTCAAGCAGCTTTAATAGTCTCAATTTTAATTCAAATGCAAACTGCT
GGTTTTAATTTGACAACTTTTCATTTTATTGGACATAGTTTAGGAGCACAAATTTTTGGG
TGTGTTGGTTATCAATTAATTCAAAATTACCACTTTACTCCAACTAGAATCACAGGATTT
GATCCAGCTGGTCCTTATTTTGGAAATTTGAATGAATGGCCAACTTTGCCGATTGCTTCA
GCGTATCCTTCACTTAATAAACTAAATGCTAAATTTGTCGACATAATTCATACTGAAAGT
TTTAAATATGGTGAAGATTATTCGGCTGGTCATATAGATTTAAAATCTAAGATTTTTGGT
TCAATACTGGAGCTTTTCAACCAAACTGCAGCATTTATTGCAGTTCAACTGATTGTAAAA
TATAATTGCCTTCATTGCAGTCACAATAGAGCAGTGCAATATTACACTGAATCAATTCAA
TCAGGTTCTGTAAGAAAATTCATATCAAATTTGTGTTCTGGTTCTTTATATGATATTGGA
TTGTGCTATGGCTCTGTTGCATCGATGGGCTTTTATGCTGATGAATATTCTGCTAATCCT
GGCCTACTATCTTAA
>g15211.t1 Gene=g15211 Length=304
MYLYQVQIVVIDGGIYFIFFGSNSSDYKNTTLNYNFASLKNTNYFNISKPTAIVNHGWIH
NIRTSFYVALAEAYLSRVDFNYIAIDWSKYSHDINYPELPPTFNVQAALIVSILIQMQTA
GFNLTTFHFIGHSLGAQIFGCVGYQLIQNYHFTPTRITGFDPAGPYFGNLNEWPTLPIAS
AYPSLNKLNAKFVDIIHTESFKYGEDYSAGHIDLKSKIFGSILELFNQTAAFIAVQLIVK
YNCLHCSHNRAVQYYTESIQSGSVRKFISNLCSGSLYDIGLCYGSVASMGFYADEYSANP
GLLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15211.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 11 | 301 | 0 |
| 2 | g15211.t1 | PANTHER | PTHR11610 | LIPASE | 32 | 292 | 0 |
| 3 | g15211.t1 | PANTHER | PTHR11610:SF164 | GH15759P-RELATED | 32 | 292 | 0 |
| 6 | g15211.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 39 | 58 | 0 |
| 5 | g15211.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 126 | 144 | 0 |
| 4 | g15211.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 246 | 261 | 0 |
| 1 | g15211.t1 | Pfam | PF00151 | Lipase | 28 | 298 | 0 |
| 7 | g15211.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 29 | 294 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed