General information for g15214.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 6.
Parent gene
- The parent gene g15214 is located on chr_4: 4502638..4503586 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15214 | g15214.t1 | isoform | g15214.t1 | 4500247 | 4502638 |
| chr_4 | g15214 | g15214.t1 | exon | g15214.t1.exon1 | 4500247 | 4500517 |
| chr_4 | g15214 | g15214.t1 | cds | g15214.t1.CDS1 | 4500247 | 4500517 |
| chr_4 | g15214 | g15214.t1 | exon | g15214.t1.exon2 | 4500657 | 4501076 |
| chr_4 | g15214 | g15214.t1 | cds | g15214.t1.CDS2 | 4500657 | 4501076 |
| chr_4 | g15214 | g15214.t1 | exon | g15214.t1.exon3 | 4501129 | 4501262 |
| chr_4 | g15214 | g15214.t1 | cds | g15214.t1.CDS3 | 4501129 | 4501262 |
| chr_4 | g15214 | g15214.t1 | exon | g15214.t1.exon4 | 4501407 | 4501461 |
| chr_4 | g15214 | g15214.t1 | cds | g15214.t1.CDS4 | 4501407 | 4501461 |
| chr_4 | g15214 | g15214.t1 | exon | g15214.t1.exon5 | 4501523 | 4501657 |
| chr_4 | g15214 | g15214.t1 | cds | g15214.t1.CDS5 | 4501523 | 4501657 |
| chr_4 | g15214 | g15214.t1 | exon | g15214.t1.exon6 | 4501811 | 4502205 |
| chr_4 | g15214 | g15214.t1 | cds | g15214.t1.CDS6 | 4501811 | 4502205 |
| chr_4 | g15214 | g15214.t1 | exon | g15214.t1.exon7 | 4502267 | 4502638 |
| chr_4 | g15214 | g15214.t1 | cds | g15214.t1.CDS7 | 4502267 | 4502638 |
| chr_4 | g15214 | g15214.t1 | TSS | g15214.t1 | NA | NA |
| chr_4 | g15214 | g15214.t1 | TTS | g15214.t1 | NA | NA |
Sequences
>g15214.t1 Gene=g15214 Length=1782
ATGTCAATTAGACGAATTGTAGTGAAAATTAATTTTTTAATTCTCAAACTTTTACGAACA
CGTGGCGGAATTTCAATTCTTCTTTTATGGCTTCTTCTTTCATTTTTATTAATTTTCTCA
ATTGTGCTGCATATCAATAATGATCCATTTAAAGTTGATAAACCATTTATTTTTATTGAA
CCAATTACGTCATATTATAGATTTCATCATAGTAATTTTAAAAGAGATTGGCATGATTAT
GAATTGATTAAAAGGGAAGCTTTAAGAACTGGTCCAGGTGAGCAAGGTCGTGGCGTATAC
ATCCCACTAGAAGAGCAAGAACTTGCTAGCAAAATCTACGTAGAAAATAAGCACAATGGA
CTTGCAAGTGACAAAATAGCTCGTGATCGATCGTTGCCAGACACTCGGCCATCTGCATGT
AGAAATAGAACATACCTCAATGAATTGCCATCTGTTTCTGTCATAATTCCATTTCATAAT
GAAGTTTTAAGTACACTGACAAGGACAATTCATAGTGTCTTTAATCGATCACCACCAGAA
TTATTGACGGAAGTTATTTTAGTGAATGATCATAGTGATAAAGAACATTGTTATGGTGAA
CTAGAAGAATATATTAAAGAATTTTTTGATCCATCTAAAATAAGATTATTAGTGATGGAT
CGAAGATATGGCTTAATGTGGGCAAGATTAGCTGGTGCACGAGCTGCAATTGGTGATGTC
TTAGTGTTTATGGATTGCCATACAGAAGCAAATGTTAATTGGTTACCACCTCTAATTGAA
CCAATTGCTTTGAATTATAGGACTTGTGTTTGTCCTTACATTGATGTCATTAGTGCACGT
GACTATTCATATATGGGAATAGGTCAAGGATCTCGAGGAGTGTTTAATTGGCAATTTTAT
TATCAATTTCTGCCTTTAAGACCAGGTGATCAAGATGATGAAACAGAACCTTTTCAATCA
CCAGTCATGATGGGATGTGTTTTTGCTATTTCTGCAAAATTCTTTTGGGAATTAGGTGGT
TACGATCCAGGTCTTTCAGTTTGGGGTGGTGAGCAATACGAATTAAGTTTTAAAACTTGG
CTATGTCATGGTCAACAACTTGATGCACCATGTTCTCGTGTTGGTCATCTTTATCGACCT
CGTCCATTTCTTGAAAATCTCAATGACACAAATTATTGCCATAGAAATTATAAAAGAGTT
GCTGAAGTTTGGATGGATGAATATGCACATCATGTTTATGATAAAGATCCAGAAGAATGG
TATCCACTTGAAATTGGTGATGTTTCATACATGAAAAGTATCAAGAAGAAATTAAATTGC
AAACCATTCAAATATTTCTTAGAAGTTGTCGCTCCTGATATGCTTGATAAATTTCCACCT
TTTGAGCCTGTTGTTTTTGCTTCTGGTGCTATTCAAAGTCTAGCATATCCAAAATATTGC
ATTGACACACTCGGATCATCAGAAGGTGAACCAATTGGTCTCTATTCTTGCAAATCTGAA
AATCTTACAGAATTTGAATTTCGTCAATATTTTATACTTAGACAACATCGTGATATTCTA
GTTGAAAATTCAAACAATGAATGTTTTGATGCCAATTATGAAAAAGTTTCAATTTTTCAT
TGTAAATTTACACAAGACAATCAATATTTTCGTTATGATGTTGATACACAGCAAATTATT
GTAGGACCAAAAAGAAAAAATAAATGTATGGATTTAAGTGAATCTAAAACAATAATTATT
GCTGCTTGTGATGCTGAAAAAATAACACAAAAATTCCATTAG
>g15214.t1 Gene=g15214 Length=593
MSIRRIVVKINFLILKLLRTRGGISILLLWLLLSFLLIFSIVLHINNDPFKVDKPFIFIE
PITSYYRFHHSNFKRDWHDYELIKREALRTGPGEQGRGVYIPLEEQELASKIYVENKHNG
LASDKIARDRSLPDTRPSACRNRTYLNELPSVSVIIPFHNEVLSTLTRTIHSVFNRSPPE
LLTEVILVNDHSDKEHCYGELEEYIKEFFDPSKIRLLVMDRRYGLMWARLAGARAAIGDV
LVFMDCHTEANVNWLPPLIEPIALNYRTCVCPYIDVISARDYSYMGIGQGSRGVFNWQFY
YQFLPLRPGDQDDETEPFQSPVMMGCVFAISAKFFWELGGYDPGLSVWGGEQYELSFKTW
LCHGQQLDAPCSRVGHLYRPRPFLENLNDTNYCHRNYKRVAEVWMDEYAHHVYDKDPEEW
YPLEIGDVSYMKSIKKKLNCKPFKYFLEVVAPDMLDKFPPFEPVVFASGAIQSLAYPKYC
IDTLGSSEGEPIGLYSCKSENLTEFEFRQYFILRQHRDILVENSNNECFDANYEKVSIFH
CKFTQDNQYFRYDVDTQQIIVGPKRKNKCMDLSESKTIIIAACDAEKITQKFH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g15214.t1 | CDD | cd02510 | pp-GalNAc-T | 153 | 451 | 2.99003E-149 |
| 12 | g15214.t1 | CDD | cd00161 | RICIN | 469 | 592 | 7.17051E-16 |
| 8 | g15214.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 72 | 461 | 7.8E-147 |
| 7 | g15214.t1 | Gene3D | G3DSA:2.80.10.50 | - | 464 | 593 | 7.6E-20 |
| 3 | g15214.t1 | PANTHER | PTHR11675:SF41 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10 | 70 | 592 | 1.6E-149 |
| 4 | g15214.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 70 | 592 | 1.6E-149 |
| 2 | g15214.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 153 | 338 | 5.3E-27 |
| 1 | g15214.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 468 | 592 | 3.3E-19 |
| 9 | g15214.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 11 | g15214.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 45 | - |
| 10 | g15214.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 46 | 593 | - |
| 16 | g15214.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 467 | 593 | 16.767 |
| 15 | g15214.t1 | SMART | SM00458 | ricin_3 | 468 | 591 | 4.5E-12 |
| 6 | g15214.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 129 | 453 | 3.66E-55 |
| 5 | g15214.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 460 | 592 | 6.49E-18 |
| 14 | g15214.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
