General information for g1523.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Maltase A1.
Parent gene
- The parent gene g1523 is located on chr_3: 11583964..11586106 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1523 | g1523.t1 | isoform | g1523.t1 | 11583964 | 11586106 |
| chr_3 | g1523 | g1523.t1 | exon | g1523.t1.exon1 | 11583964 | 11584530 |
| chr_3 | g1523 | g1523.t1 | cds | g1523.t1.CDS1 | 11583964 | 11584530 |
| chr_3 | g1523 | g1523.t1 | exon | g1523.t1.exon2 | 11584648 | 11584752 |
| chr_3 | g1523 | g1523.t1 | cds | g1523.t1.CDS2 | 11584648 | 11584752 |
| chr_3 | g1523 | g1523.t1 | exon | g1523.t1.exon3 | 11584848 | 11585234 |
| chr_3 | g1523 | g1523.t1 | cds | g1523.t1.CDS3 | 11584848 | 11585234 |
| chr_3 | g1523 | g1523.t1 | exon | g1523.t1.exon4 | 11585423 | 11586106 |
| chr_3 | g1523 | g1523.t1 | cds | g1523.t1.CDS4 | 11585423 | 11586106 |
| chr_3 | g1523 | g1523.t1 | TSS | g1523.t1 | NA | NA |
| chr_3 | g1523 | g1523.t1 | TTS | g1523.t1 | NA | NA |
Sequences
>g1523.t1 Gene=g1523 Length=1743
ATGTTACGGTGTACTTTTGTGCTATTGTGTTTTATTTATTCGAGCACCGTGCATTCTTTA
GAATGGTGGGAAGGTGGAAATTTTTATCAAATTTATCCACGTTCTTATATGGACAGTGAT
GGTGATGGAATTGGTGATTTATTAGGAATAGCTAGTAAAATTCCATACTTGAAATCAATT
GGCATTGATGGAGTTTGGTTGTCTCCAATCATGAAATCACCACAAGCTGATTATGGCTAT
GATATTTCTGACTACAAAGACATTCATTGGGAATATGGAAATTTGAATGATTTTGATAAA
CTTCTTGCAGCTTGCAAAGAAAATGGTGTGAAATTAATTCTCGATCTTGTTCCTAATCAT
TCATCAAATAAACATGAATGGTTTGAAAAAAGTGAAAAACGTGTTCCAGGTTATGAAAAT
TATTATGTCTGGCATTCTGGCACATTTGATCCAATTACTGGTAAGCGAGTGCCACCAAAT
AATTGGCCAAGTGTTTTTAGATTCCCAGCATGGACTTGGTCAAATATTCGAAAGCAATTT
TATTATCATGCTTTTCTTGCTGCTCAACCTGATTTGAATTATCGAAATCCAAAAGTTGTG
CAAGAGATGAAAGATGTAATTTCATTCTGGCTTAATAAAGGTGTTTATGGTTTTCGTATT
GATGCTGTTCCTTACATGTTTGAGGTTAAACCAGATTTCCGAGGAAACTATCCTGATGAA
CCTTTGACAGGAGCAACTTGTCCCAATCCTGAAGATTACTGCTACACGCAGCACATTTAT
ACACAAGATCGTGATGAAACTTATGACATGATTTTCCAATGGCGAAGTCTTATCAACAGC
ATTTCAGCTGCATCGGTTGATAAACTTCCAAGAATTATAATGACTGAAGCCTACACTTCA
TTTGATAATATCATAAGATTTTATGGTGATGGAAATAGAAATGGCAGCCATATTCCTTTT
AGTTTTGATTTAATTAGCAATGTTAATATTGATAGCACAGCTGAAGATTATAAATATCGA
ATTGATAGAATTTTGAGTGCTATTCCTAAAGGACAACATGCTAATTGGGTTCTTGGAAAT
CATGATCAACATAGAATGGCGACACGTTTAGGAGTAGAAAGGACAGATTTGCTCAATATT
CTTCTGCAAACACTTCCTGGAATAGCTGTTACATATCAAGGAGAAGAACTTGGCCTGAAA
AATACCTATTTAACTTGGGAAGAAACTCTTGATCCAAGTGCATGTAATACACAAGATCCA
ATAAATTATGAAAAATTATCACGTGATGGATGCCGAACACCTTTTCCATGGAATAATTCA
ACAAATGCTGGATTTTCAACTGCATCAAAAACTTGGCTTCCTGTCAATCCTGATTATGTC
ACAATGAATGTTCAATTTCAAGAAGCAGCTGCAAATAGTCATTTGAAAATTTTTAGAAAA
TTGACAGCATTGAGAAAACAAAATGTTTTAAGACAAGGAAAATATGAGTCAAATTTAGTC
AATAACAAAAATGTCATTATTTATCGTCGATGGTATGAAACTGATGTTGTTATTGTCATT
CTTAATTTTGGAAAAACTGCAGTTGTCAATGTACCTGAAGCATTCCCAAGTGTCAATTTT
CCTAGTACAATGAAAGTTTACACTGGATCATTAAATAATTTTGAAGCAGGAGCTGAATTG
ACTTTAACGAGTATAAATGTTCCAGCTGATAAAGCTGTTGTTCTTACAAATATGTCATTG
TAA
>g1523.t1 Gene=g1523 Length=580
MLRCTFVLLCFIYSSTVHSLEWWEGGNFYQIYPRSYMDSDGDGIGDLLGIASKIPYLKSI
GIDGVWLSPIMKSPQADYGYDISDYKDIHWEYGNLNDFDKLLAACKENGVKLILDLVPNH
SSNKHEWFEKSEKRVPGYENYYVWHSGTFDPITGKRVPPNNWPSVFRFPAWTWSNIRKQF
YYHAFLAAQPDLNYRNPKVVQEMKDVISFWLNKGVYGFRIDAVPYMFEVKPDFRGNYPDE
PLTGATCPNPEDYCYTQHIYTQDRDETYDMIFQWRSLINSISAASVDKLPRIIMTEAYTS
FDNIIRFYGDGNRNGSHIPFSFDLISNVNIDSTAEDYKYRIDRILSAIPKGQHANWVLGN
HDQHRMATRLGVERTDLLNILLQTLPGIAVTYQGEELGLKNTYLTWEETLDPSACNTQDP
INYEKLSRDGCRTPFPWNNSTNAGFSTASKTWLPVNPDYVTMNVQFQEAAANSHLKIFRK
LTALRKQNVLRQGKYESNLVNNKNVIIYRRWYETDVVIVILNFGKTAVVNVPEAFPSVNF
PSTMKVYTGSLNNFEAGAELTLTSINVPADKAVVLTNMSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g1523.t1 | CDD | cd11328 | AmyAc_maltase | 20 | 496 | 0.0 |
| 8 | g1523.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 22 | 486 | 1.5E-160 |
| 9 | g1523.t1 | Gene3D | G3DSA:3.90.400.10 | - | 122 | 196 | 1.5E-160 |
| 7 | g1523.t1 | Gene3D | G3DSA:2.60.40.1180 | - | 488 | 577 | 5.3E-6 |
| 2 | g1523.t1 | PANTHER | PTHR10357 | ALPHA-AMYLASE FAMILY MEMBER | 6 | 575 | 1.4E-228 |
| 3 | g1523.t1 | PANTHER | PTHR10357:SF175 | MALTASE A1 | 6 | 575 | 1.4E-228 |
| 1 | g1523.t1 | Pfam | PF00128 | Alpha amylase, catalytic domain | 45 | 402 | 8.9E-97 |
| 11 | g1523.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 12 | g1523.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 13 | g1523.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 12 | - |
| 14 | g1523.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 19 | - |
| 10 | g1523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 580 | - |
| 17 | g1523.t1 | SMART | SM00642 | aamy | 30 | 432 | 2.3E-120 |
| 5 | g1523.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 21 | 488 | 1.62E-120 |
| 4 | g1523.t1 | SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 499 | 575 | 1.39E-5 |
| 6 | g1523.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 16 | g1523.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01187 (alpha-glucosidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed