General information for g1524.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Maltase A1.
Parent gene
- The parent gene g1524 is located on chr_3: 11590193..11592000 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1524 | g1524.t1 | isoform | g1524.t1 | 11587916 | 11590193 |
| chr_3 | g1524 | g1524.t1 | exon | g1524.t1.exon1 | 11587916 | 11589085 |
| chr_3 | g1524 | g1524.t1 | cds | g1524.t1.CDS1 | 11587916 | 11589085 |
| chr_3 | g1524 | g1524.t1 | exon | g1524.t1.exon2 | 11589240 | 11589371 |
| chr_3 | g1524 | g1524.t1 | cds | g1524.t1.CDS2 | 11589240 | 11589371 |
| chr_3 | g1524 | g1524.t1 | exon | g1524.t1.exon3 | 11589750 | 11590193 |
| chr_3 | g1524 | g1524.t1 | cds | g1524.t1.CDS3 | 11589750 | 11590193 |
| chr_3 | g1524 | g1524.t1 | TSS | g1524.t1 | NA | NA |
| chr_3 | g1524 | g1524.t1 | TTS | g1524.t1 | NA | NA |
Sequences
>g1524.t1 Gene=g1524 Length=1746
ATGAAAGTTCTGCTAGTGTTATTGCTAATTGTGACTGTAAAATCACAAACTGAAAATGAG
TTAGATTGGTGGGAAAGCGGAAATTTTTATCAAATTTATCCACGTTCTTATATGGACAGT
GATGGTGATGGAATCGGCGATTTGCAAGGAATAAAAAGTAAATTGGATTATGTAAAATCA
CTCGGAATGGATGGAGTTTGGCTGTCACCTATTTACAAATCTCCACAAGCTGATTTTGGC
TATGATATTTCAGATTATCGTGATATTAATGAAGATTATGGCACATTAGAAGATTTCCAA
GAAGTTCTTGATAAATGCAATGAAATTGGACTTAAATTAATTCTTGACTTTGTACCAAAT
CATTCGTCAGATGAGCATGACTGGTTTCAGAAAAGTGAAGCCCGTGTGCCAGGCTATGAA
GATTTTTATATCTGGCGTGATGGAAAAATTGATCCCTACACAAATCTTCTCGTTCCGCCA
ACAAATTGGATCAGCTTCTTCCGTTACAGTGCTTGGCGATGGTCAAATATTCGACAGCAA
TTTTACCTTCATCAATTTCATTACAAGCAACCTGACCTAAATTATCGTGATGCAAAATTG
GTGCAGGAAATGAAAAATATTTTGACCTATTGGATGACAAAAGGAGTTGCTGGCTTTAGA
ATTGACATTATTGTTTGCCTTTATGAGAAAATGTTTTCAAATGGTACTTTTCCGGATGAA
CCAGTTGGAAATCCTAATTGTGGCTTTAATGACCACTGCTATCTTGATCATATTTATACA
CAAGATCAAGATGAAACTTTCGATATGGCTTATCAATGGCGTGAACTTTTAGATGAATTT
AAGGAAACTTTTGGAGGATTTACAAGAATTATGATGACAGAATCTTATTCATCAGTTGAA
AAAGCTCAAAGGTTTTATGGAAATGGAACTAGAAAAGGCTCATATGTTCCATTTAATTTT
GAAATTATTAAAAATATGAATAAAGAAAGCACAGCAAAAGATTACAAACGAACAATCGAT
TCTTGGCTTGATCCAATGCCAGCTGGTGTTTTAGCAAATTGGGTTGTTGGAAATCATGAC
CAACATCGTGTTGCATCACGTTTAGGAGTTCAAAAAGGTGATTTGATTAATATTATGGTT
CAAACACTTCCAGGAATAGCAATAACGTATATGGGAGAAGAACTTGTTATGACAAATGTT
CATGTTTCCTGGAATGACACTCTTGATCCGCAAGCATGTAACACAAATGATCCGATTAAT
TATGAGTCATCATCACGTGATCCTGCTAGAACACCTTTCCCTTGGGACAGTTCGAAAAAC
GGAGGATTTTCAACAGCCGATAAAACTTGGCTGCCAGCCGGTGATTTATACAAAACTGTT
AATGTTCAATTTCAAGAGCAAGCTCAAAATAGTCATTTGAAAATATTCAGAAAATTAACA
ACAGTGAGAAAACAAAATGTTTTTAGACGTGGAGATTATCATGGAGTTTTGACAAATAAT
GAAAATGTTTATGCATATTCACGAAATTATGGCGATCAATATGCAGTGATAATTTTGAAT
TTCAGCAAAAATACTGAAACTGTTAATGTATTGAATGCATTTGAAAATTCAATTCCAACT
CAAATGAAAATTTACACTTCATCGCTTGCTTCTGGACTTGGCGATGATACAACAGTGAAC
ACTTCAAGTGTCAAAGTAGATAGCAATATTGGAGTTGTTTTATTATCAACAAATATCAAT
ATTTAA
>g1524.t1 Gene=g1524 Length=581
MKVLLVLLLIVTVKSQTENELDWWESGNFYQIYPRSYMDSDGDGIGDLQGIKSKLDYVKS
LGMDGVWLSPIYKSPQADFGYDISDYRDINEDYGTLEDFQEVLDKCNEIGLKLILDFVPN
HSSDEHDWFQKSEARVPGYEDFYIWRDGKIDPYTNLLVPPTNWISFFRYSAWRWSNIRQQ
FYLHQFHYKQPDLNYRDAKLVQEMKNILTYWMTKGVAGFRIDIIVCLYEKMFSNGTFPDE
PVGNPNCGFNDHCYLDHIYTQDQDETFDMAYQWRELLDEFKETFGGFTRIMMTESYSSVE
KAQRFYGNGTRKGSYVPFNFEIIKNMNKESTAKDYKRTIDSWLDPMPAGVLANWVVGNHD
QHRVASRLGVQKGDLINIMVQTLPGIAITYMGEELVMTNVHVSWNDTLDPQACNTNDPIN
YESSSRDPARTPFPWDSSKNGGFSTADKTWLPAGDLYKTVNVQFQEQAQNSHLKIFRKLT
TVRKQNVFRRGDYHGVLTNNENVYAYSRNYGDQYAVIILNFSKNTETVNVLNAFENSIPT
QMKIYTSSLASGLGDDTTVNTSSVKVDSNIGVVLLSTNINI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g1524.t1 | CDD | cd11328 | AmyAc_maltase | 20 | 494 | 0.0 |
| 8 | g1524.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 23 | 484 | 4.0E-158 |
| 9 | g1524.t1 | Gene3D | G3DSA:3.90.400.10 | - | 123 | 197 | 4.0E-158 |
| 7 | g1524.t1 | Gene3D | G3DSA:2.60.40.1180 | - | 492 | 561 | 8.8E-9 |
| 2 | g1524.t1 | PANTHER | PTHR10357 | ALPHA-AMYLASE FAMILY MEMBER | 3 | 575 | 5.8E-233 |
| 3 | g1524.t1 | PANTHER | PTHR10357:SF175 | MALTASE A1 | 3 | 575 | 5.8E-233 |
| 1 | g1524.t1 | Pfam | PF00128 | Alpha amylase, catalytic domain | 46 | 401 | 1.4E-99 |
| 11 | g1524.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 15 | - |
| 12 | g1524.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 13 | g1524.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 11 | - |
| 14 | g1524.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 15 | - |
| 10 | g1524.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 16 | 581 | - |
| 16 | g1524.t1 | SMART | SM00642 | aamy | 31 | 430 | 1.8E-112 |
| 5 | g1524.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 21 | 486 | 1.23E-113 |
| 4 | g1524.t1 | SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 491 | 530 | 1.21E-7 |
| 6 | g1524.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 15 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01187 (alpha-glucosidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed