Gene loci information

Transcript annotation

  • This transcript has been annotated as Rho guanine nucleotide exchange factor 12.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15265 g15265.t1 isoform g15265.t1 4701536 4725492
chr_4 g15265 g15265.t1 exon g15265.t1.exon1 4701536 4701802
chr_4 g15265 g15265.t1 cds g15265.t1.CDS1 4701536 4701802
chr_4 g15265 g15265.t1 exon g15265.t1.exon2 4701854 4701931
chr_4 g15265 g15265.t1 cds g15265.t1.CDS2 4701854 4701931
chr_4 g15265 g15265.t1 exon g15265.t1.exon3 4701988 4702003
chr_4 g15265 g15265.t1 cds g15265.t1.CDS3 4701988 4702003
chr_4 g15265 g15265.t1 exon g15265.t1.exon4 4703595 4703610
chr_4 g15265 g15265.t1 cds g15265.t1.CDS4 4703595 4703610
chr_4 g15265 g15265.t1 exon g15265.t1.exon5 4708998 4709532
chr_4 g15265 g15265.t1 cds g15265.t1.CDS5 4708998 4709532
chr_4 g15265 g15265.t1 exon g15265.t1.exon6 4709674 4709853
chr_4 g15265 g15265.t1 cds g15265.t1.CDS6 4709674 4709853
chr_4 g15265 g15265.t1 exon g15265.t1.exon7 4710959 4711753
chr_4 g15265 g15265.t1 cds g15265.t1.CDS7 4710959 4711753
chr_4 g15265 g15265.t1 exon g15265.t1.exon8 4713623 4714775
chr_4 g15265 g15265.t1 cds g15265.t1.CDS8 4713623 4714775
chr_4 g15265 g15265.t1 exon g15265.t1.exon9 4715084 4715140
chr_4 g15265 g15265.t1 cds g15265.t1.CDS9 4715084 4715140
chr_4 g15265 g15265.t1 exon g15265.t1.exon10 4722543 4722906
chr_4 g15265 g15265.t1 cds g15265.t1.CDS10 4722543 4722906
chr_4 g15265 g15265.t1 exon g15265.t1.exon11 4722963 4723186
chr_4 g15265 g15265.t1 cds g15265.t1.CDS11 4722963 4723186
chr_4 g15265 g15265.t1 exon g15265.t1.exon12 4723244 4723473
chr_4 g15265 g15265.t1 cds g15265.t1.CDS12 4723244 4723473
chr_4 g15265 g15265.t1 exon g15265.t1.exon13 4723532 4723863
chr_4 g15265 g15265.t1 cds g15265.t1.CDS13 4723532 4723863
chr_4 g15265 g15265.t1 exon g15265.t1.exon14 4723924 4725202
chr_4 g15265 g15265.t1 cds g15265.t1.CDS14 4723924 4725202
chr_4 g15265 g15265.t1 exon g15265.t1.exon15 4725263 4725376
chr_4 g15265 g15265.t1 cds g15265.t1.CDS15 4725263 4725376
chr_4 g15265 g15265.t1 exon g15265.t1.exon16 4725433 4725492
chr_4 g15265 g15265.t1 cds g15265.t1.CDS16 4725433 4725492
chr_4 g15265 g15265.t1 TSS g15265.t1 NA NA
chr_4 g15265 g15265.t1 TTS g15265.t1 NA NA

Sequences

>g15265.t1 Gene=g15265 Length=5700
ATGAGTCGATTTCACTTAGAACGTCGTTTCACATGCGAATGTTGTGCATTTTCATTTAAA
TATCGAGCAGAACTTGTTCAACATCAACAGTCACAGCATAGCGATGAATGCAATGAAGAA
TGCAAAACTTGTGGTAAAAAATTTAAAAATAGAAGAAAATTGAGAAGACATGTGAGGAAC
ATGCATGAAGTTAGTGAAAAAGTTTTCACCTGTGACGAATGTGGAAAAATATCAAAAAAT
AAAAAAAGTCATGTGACACATTTGAGGGTGCATAGTGATAAAAATAATTATTCATGCATG
TACTGTCCGAGAACTTTTAAGCATTCTTCTGGTTTTACATATCATATTCGAACACATACA
GAAAAGAGCAATGATAGATCACAACAAAGCAATGGCACATCTTCACCATCATCACCACAA
CCACCTTCATCACTAAATTCTTCCAAAAAGTCTTCAGAAAATGGCAGTAATCATCAACGA
CAGCGAAGTGGAAAACTTTTATTAGAAAATCTCAATATTACATCGTCAAATGGCAGCGAA
AGACCAAAGCCACAAATTCTTGAACTTGTAATAAACAAGGACAAATATGGCTACGGTATG
AAAGTGTCAGGTGAAAATCCAGTATTTGTAGATAGTGTCAAAGAAGGTGGTGCAGCTTTT
CGTGCTGGTTTACATGCTGCCGATATGATTTTGCGTGTTAATGGACATAATGTGAGATAC
TCAACGCATGCTGAAGTTGTGCAGCTGATGAAAGCAACTCAAAATGTTGAATTGACTGTG
CAGAGAAATGCGAGAAATTTTGCATTACCACTTGGTGGTTCCAACAGTCCTGTTATTATT
GGTGCAACCACACCTAACACACCGACACCTACTAGTCAGAGAAATAGTATTACAGCACCA
CTGCCTGTTGATCACAACAAGCGAATGGAAGTAGAATTTACAAAAATGCATACACTCTTT
ATGATGCTCGAGCAGGAGAAGAAAAATCTCGAAAAATTGCGTGAGAATGAGTCACAAAAT
GGAAATGAAATTGTGCGTGCTGAAGCAAATATTCGAACACTTCAAGAGCAATTAAAACAA
TGGACTGGCGATGCATCAAATTTTAATATTGCCAACACGTCGTCAATTACAACGCCATCA
ACAAAGATTACAACAACACCAACTACGACTGCATCGCAGCATTTTCTTGCTCGACTTCCA
CGAAGTTTGAGTCAATTGAATCTCGGTAGTAAAAGAAAGTCAACAAATAGCAATGAAGCA
CCAAGACCATCTGTTCCATCACCATCATCATCATCTTCCTCGAATACTCCAATATCAAGT
CCAAGTCATCAGCAACAACAACAACAGCAACAAAAGCCAAAAGTGCGGCATCAACATCCA
ACTGTAACTGCTGATGTTCCACCACCACTACCACAGCGTAACATTCCTAGAAAAGGTTCA
ACAACTGGCACACAAATAAGTGATTTAGATTCAAGTCTTATGGCTAAAAGTGCAGTTACA
GCATCACCAAATATCAGTGGTGGAAGTAAAAAGAAAAGTAAACAAAAAGCTTATTCAGAT
CCAAAAATGTCAAGTGAAATGATGCTTCAAATGGAAGCTGCAAGTTATCCACCACCATTG
CCACCACGTACAACACCAACTGGTGATGTCTTTGGTCAACCAATTGTCAATAAAGATTCA
TCTGATGGAATTTCACCAACCATTGATGGTCGACCATTGCCAAATAGTTGTGCAACTCAA
ATGCATTTTCCTTTAATCACGACAAGTGTTGCTGTTAGAGATGGAATGATGCCACCTGGA
ATGTTAAATTTTCATTCATTTGATCAAAGTGTTATGAACACAAGTAGCAGCAGCTTACCA
CCTGAATTATCTGGTGCTGTTGGTGTGAAATCATCAAAAAAGCATCACAGAAATGTATCA
AATCCCGACATATCACCACCTGGTACACCACCACCACCATATCAGCAACAACATCAAATT
CAAGCAGCACAAACAAATATCGAGCAACGTGACATTCTCGCATTTGAATGTGACAATGAG
ACTGATGAAGAACTTTTAGGCGAGGATGATGGAATTTTCCGTTCAATTTCAATGTTGACA
GATCCAGAACATTCTGCATATCTTGTAGTTTTTCTTAATTTTGTCATCAGTAACTCAAAA
CCTTCAGCAATACTTTTCTATCTCATAACCGACCTTTATAAGAAAGGAAATGTCAAAGAT
ATGCGAAAATGGGCTTATGAAATTCATTCAACATTTCTTGTTCCAACTGCACCGCTCTCT
TTCTTTCCAACTGATAATGACAATCTCTGTGAAACTCTTGCACGTGATATTGATGATAAA
TTGGCACAAACAAAAAATTATCAGCCAACAGATAGAAGTGGAAGTGGACAAGATTTTGAA
ATGGCTGGAATTTTACGAACAGTTTTTCAAAAAGCAAGATCAAAAGCGAGAGATCTCATA
AATCGTCAAATGGAAGAATTTCAAGAAAAAAGAACAGCTGGCTTGGGAACAATGTATGGA
CCATCTGCATCGGAACTTGCTGCAGCACGAAAGAACAAAGCAACAGAGCAGAAAATTGTT
GAAGATTTTCTTATGCCAAAATTGCAACAAATGTTAGAAGATACTGAAAATGCACCAGAA
AATGATGAAAAAATGGCTCTGGCTTCAGCATTGTCAACAGTTGTTCATAAGATTTTCCTA
CCACGAGGTGCGAATGCACCAAATACTGAACGAATTCATCATTATGTGACGAGAGAAAAA
AGTTTTAAATCGCGACTTATAAGTAAAAATCGAAAAGCTGTAGTTCGTGGTCATCATTTG
AGTTTGAGACAGTATTACGAAACAACTCATTGCAATCATTGTGGAAATCTTATTTGGGGT
GTTGCACCACAAGGATATTCATGTAATGATTGTGGACTAAATGTACATCGAAATTGTGCG
AAATTACTGGAAGAAACTTGCCCTGGACCTGTCAATGTTCCAGTTGATAAGTTTACGAAA
TTTATGGATAAAATTAGAGAGAAAGGTCATGGCATTCAGAATGCAGCAAAGAAACCGGAC
GAAGACGTTGTGCCATGGGATGACGCACTACCATCCGATCGTTCAGCATCATTTAGCGCA
CGTCCTCGTGGCGATACACAATTTCAACGTCTTAATCAGCAAACATCGAATAGCACATCG
CAACTTCAATCTCAAGATTTATCGCAGACTGATTTTGCGCATGGATCAAATAGCACAATT
ACAAGTTCTGCTGGTGGTTCCTCTGGTGGAATTGCGGGTTCTCCACAGACACATACAAGT
ATGGAAGGTTTTGGTGATCATACGAGTACACCAAATGATGGTAGCAAACAACGTGGTAAA
CAAAAGTCATCACAACCGAATGCAAGAAGTGAATCGTACAAAGAATGCTCGCCTAAAAGA
AGTCGAACAAATCGACCTAAATCTGACCCAAGTCTTTATGAAGATGACGCTCCATCGCCT
TTAGATCAAGGTCATGACGATACATTAAATTCATCATCAGTGACAAACACGCCAGGTAAA
CCAATACCAGGTACAAGTCTTGATTCATCATCAGCATCATCTGAAGATGAATCATTTTCA
AGAGATCCCGATGCTACCTGCTTTGCACCTGAAATTTTCCAACAACTTACCGATGCTGAA
AAAAAGAGACAGGAAATCATCAATGAACTTTTTGAGACAGAAAAGAATCATGTGAAGATC
TTAAAGGTGCTTCATAATGTCTTCATGGTGCCATTAGAACAAAGTAAAGCGATGACTTCT
GAGCTGATACAGCTTGTTTTTCCACCATCATTACTTGTTTTAAAAGATTGGCATAATAAC
TTTGAAGCAGCATTAAAACAACGATGGAAAGAACATAATAGTATCATAAAAGAAGTTGGT
GATTGCCTCAATGTTTTTGATGGCCCATCAGGTGAAACACTCAAGGAACATGCGGCTCGC
TTTTGTGCGCGCCAACAAATAGCTTTAGAGGTGCTCAAAGAGCGTCGAAAAAAGGATGAA
AATTTGCAACGTGGCTTAATTAAAGCTGAATCACATAAAGCATGTCGTCGTCTGCAATTG
AAAGATTTACTGCCGGCAGTACTACAACGACTGACAAAATATCCATTATTATTTGAACGA
TTACAAAAATGCAGTGAGGGAACTGATGCTGAATCAATTAAACGCGCATTGGATGCGTCA
AAAGCTATTTTGGATTATGTTAATCAAGCCGTACGGATAGCTGAAGAACTCCGATCGATC
CAAAAGAAACTTGACAAATCCTCATATGAAAAAGAAGCGCCAAATGAGTTCAAAAATCTT
GACCTCACAAATTACAAACTCATTCACGATGGATTTCTTACCATTAAAAAAGGCACAATT
CAACTTCGAGTTTTGTTATTTGAAAATATGATTGTGTTGTTACAAAAACAAGATGATAAA
TATCTCATGAAATCATTTGCTAATCCGACTGGTATCGGTGATAATGCAATGGTTAGTCCA
ATAACAAAAATATGCAACACAATTGTACGTCTCAATGCTGTTGACAATCGTGCATTTTTC
CTCATCAATCAGTCAGATCAAAATTCACAAATGTTGGAATTGACAGCACCAAGTCAGAGT
GAAAGTGAAGTTTGGATAAGAAAAATAACGGAAGCAGCTGAAAAAGCAAATCATCTAAAG
AAAGTTCAATCGAAACCTTTACCTGCTGTTCCTGTACCACCACCACCACCAACGCTTGAA
GAAACTCCCGAAAATTTACTAAATTCACCTCCCGAAGATAACGAACAGCAACCTAAAGAG
CCAGAAGCGAAAGAACCTGAACCACCTGAGCCTGAAACTGAACCACAAGAACCAGAAGAT
GATCCAAATGCCATTCAAACAACACAACCCTGCCAATTAATTCAACCAACAGAAATCAGT
ATCGAAGCACAAGAAGTTCAAGAAGCAAGTCGAGTAGTCACACCTGAAGAATCATTAAGA
CGTCATGGTGATGTCATACAGTCATCAGTTGGTGAAATGCAAAGAATTATTTGTGAACTT
AATCGTGTGCCGCAGGAACATTTTACAGAAATTGCTGACATTGCTGCACAACCTGAAGCA
CAGTCAGATCTTGCTGATCTTGCATTAGCTGCTTTTGCACAATCGAAATTCCTTGTTGAA
TGTCTCAAAAGTGCTCTCATTAATGGCACAGTTAGTCCACCTTTATCAAGTGTTACTGGT
GCACCTGCACTTTGTGACAATTGTGTGACAGTTGAAAATCCAATAGAAATAAAATCAAAT
GTGAACGAAATTAATAACATCGATATGGAAAATGATGGAGATAATCTTTATTGTGAAATT
GAACCATTAAAAGATGAAGCAAATTCTGCTGCTGCTGCAGTAACAAATAAAGTTAGTCAT
ATGGAAATTAATGACACATATAGTGGAAGTGTATGTGGTGCAGATTTAAAGAAAAATGGA
AGCATCAAAATTGATAAAATTGCTGCATCAATTACGACTTTGAATTCTTTAGTTTCGCAA
TTGACGATAAAAATAGCGGAACGTGATCATGAACGTGACATGTATAGACGAGAAAATCAA
AGATTACGGCAACAACTACAAATGATTCAAGATGAAGAAATTGTTGGAAATGCTGTGAAT
GATTTAGAGATAGATGTGATTGAAGAAGGTGATGACGGCCTAAATCAACCAGAGCAATGA

>g15265.t1 Gene=g15265 Length=1899
MSRFHLERRFTCECCAFSFKYRAELVQHQQSQHSDECNEECKTCGKKFKNRRKLRRHVRN
MHEVSEKVFTCDECGKISKNKKSHVTHLRVHSDKNNYSCMYCPRTFKHSSGFTYHIRTHT
EKSNDRSQQSNGTSSPSSPQPPSSLNSSKKSSENGSNHQRQRSGKLLLENLNITSSNGSE
RPKPQILELVINKDKYGYGMKVSGENPVFVDSVKEGGAAFRAGLHAADMILRVNGHNVRY
STHAEVVQLMKATQNVELTVQRNARNFALPLGGSNSPVIIGATTPNTPTPTSQRNSITAP
LPVDHNKRMEVEFTKMHTLFMMLEQEKKNLEKLRENESQNGNEIVRAEANIRTLQEQLKQ
WTGDASNFNIANTSSITTPSTKITTTPTTTASQHFLARLPRSLSQLNLGSKRKSTNSNEA
PRPSVPSPSSSSSSNTPISSPSHQQQQQQQQKPKVRHQHPTVTADVPPPLPQRNIPRKGS
TTGTQISDLDSSLMAKSAVTASPNISGGSKKKSKQKAYSDPKMSSEMMLQMEAASYPPPL
PPRTTPTGDVFGQPIVNKDSSDGISPTIDGRPLPNSCATQMHFPLITTSVAVRDGMMPPG
MLNFHSFDQSVMNTSSSSLPPELSGAVGVKSSKKHHRNVSNPDISPPGTPPPPYQQQHQI
QAAQTNIEQRDILAFECDNETDEELLGEDDGIFRSISMLTDPEHSAYLVVFLNFVISNSK
PSAILFYLITDLYKKGNVKDMRKWAYEIHSTFLVPTAPLSFFPTDNDNLCETLARDIDDK
LAQTKNYQPTDRSGSGQDFEMAGILRTVFQKARSKARDLINRQMEEFQEKRTAGLGTMYG
PSASELAAARKNKATEQKIVEDFLMPKLQQMLEDTENAPENDEKMALASALSTVVHKIFL
PRGANAPNTERIHHYVTREKSFKSRLISKNRKAVVRGHHLSLRQYYETTHCNHCGNLIWG
VAPQGYSCNDCGLNVHRNCAKLLEETCPGPVNVPVDKFTKFMDKIREKGHGIQNAAKKPD
EDVVPWDDALPSDRSASFSARPRGDTQFQRLNQQTSNSTSQLQSQDLSQTDFAHGSNSTI
TSSAGGSSGGIAGSPQTHTSMEGFGDHTSTPNDGSKQRGKQKSSQPNARSESYKECSPKR
SRTNRPKSDPSLYEDDAPSPLDQGHDDTLNSSSVTNTPGKPIPGTSLDSSSASSEDESFS
RDPDATCFAPEIFQQLTDAEKKRQEIINELFETEKNHVKILKVLHNVFMVPLEQSKAMTS
ELIQLVFPPSLLVLKDWHNNFEAALKQRWKEHNSIIKEVGDCLNVFDGPSGETLKEHAAR
FCARQQIALEVLKERRKKDENLQRGLIKAESHKACRRLQLKDLLPAVLQRLTKYPLLFER
LQKCSEGTDAESIKRALDASKAILDYVNQAVRIAEELRSIQKKLDKSSYEKEAPNEFKNL
DLTNYKLIHDGFLTIKKGTIQLRVLLFENMIVLLQKQDDKYLMKSFANPTGIGDNAMVSP
ITKICNTIVRLNAVDNRAFFLINQSDQNSQMLELTAPSQSESEVWIRKITEAAEKANHLK
KVQSKPLPAVPVPPPPPTLEETPENLLNSPPEDNEQQPKEPEAKEPEPPEPETEPQEPED
DPNAIQTTQPCQLIQPTEISIEAQEVQEASRVVTPEESLRRHGDVIQSSVGEMQRIICEL
NRVPQEHFTEIADIAAQPEAQSDLADLALAAFAQSKFLVECLKSALINGTVSPPLSSVTG
APALCDNCVTVENPIEIKSNVNEINNIDMENDGDNLYCEIEPLKDEANSAAAAVTNKVSH
MEINDTYSGSVCGADLKKNGSIKIDKIAASITTLNSLVSQLTIKIAERDHERDMYRRENQ
RLRQQLQMIQDEEIVGNAVNDLEIDVIEEGDDGLNQPEQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
27 g15265.t1 CDD cd00992 PDZ_signaling 186 261 4.21891E-18
25 g15265.t1 CDD cd00029 C1 938 987 5.22548E-13
26 g15265.t1 CDD cd00160 RhoGEF 1223 1408 2.8403E-38
28 g15265.t1 CDD cd13329 PH_RhoGEF 1447 1553 1.45692E-33
24 g15265.t1 Coils Coil Coil 316 364 -
22 g15265.t1 Coils Coil Coil 1216 1236 -
23 g15265.t1 Coils Coil Coil 1845 1872 -
16 g15265.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 5 65 1.2E-8
15 g15265.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 66 123 3.2E-11
20 g15265.t1 Gene3D G3DSA:2.30.42.10 - 182 267 2.0E-22
21 g15265.t1 Gene3D G3DSA:1.20.58.1850 - 689 899 1.0E-52
18 g15265.t1 Gene3D G3DSA:3.30.60.20 - 930 994 7.4E-18
19 g15265.t1 Gene3D G3DSA:1.20.900.10 - 1205 1425 1.2E-58
17 g15265.t1 Gene3D G3DSA:2.30.29.30 - 1426 1565 2.9E-37
44 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 120 167 -
46 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 125 167 -
45 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 409 483 -
55 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 409 457 -
53 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 497 512 -
54 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 497 523 -
43 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 613 663 -
50 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1051 1092 -
52 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1107 1132 -
56 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1107 1159 -
48 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1133 1152 -
41 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1172 1203 -
42 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1172 1194 -
51 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1559 1623 -
47 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1567 1581 -
49 g15265.t1 MobiDBLite mobidb-lite consensus disorder prediction 1595 1611 -
6 g15265.t1 PANTHER PTHR45872:SF2 RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D 184 1797 0.0
7 g15265.t1 PANTHER PTHR45872 RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D 184 1797 0.0
3 g15265.t1 Pfam PF00595 PDZ domain 193 261 1.6E-11
2 g15265.t1 Pfam PF09128 Regulator of G protein signalling-like domain 690 899 1.1E-42
5 g15265.t1 Pfam PF00130 Phorbol esters/diacylglycerol binding domain (C1 domain) 938 988 4.2E-12
1 g15265.t1 Pfam PF00621 RhoGEF domain 1226 1408 2.9E-32
4 g15265.t1 Pfam PF17838 PH domain 1435 1554 2.2E-30
38 g15265.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 12 33 -
39 g15265.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 41 62 -
40 g15265.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 99 119 -
37 g15265.t1 ProSitePatterns PS00479 Zinc finger phorbol-ester/DAG-type signature. 938 987 -
59 g15265.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 10 38 10.533
61 g15265.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 39 67 11.448
58 g15265.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 69 96 10.699
60 g15265.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 97 124 11.676
62 g15265.t1 ProSiteProfiles PS50106 PDZ domain profile. 188 253 14.858
63 g15265.t1 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 937 987 14.043
57 g15265.t1 ProSiteProfiles PS50010 Dbl homology (DH) domain profile. 1222 1410 25.62
64 g15265.t1 ProSiteProfiles PS50003 PH domain profile. 1446 1554 7.558
34 g15265.t1 SMART SM00355 c2h2final6 10 33 0.11
36 g15265.t1 SMART SM00355 c2h2final6 39 62 0.0018
35 g15265.t1 SMART SM00355 c2h2final6 69 91 0.015
33 g15265.t1 SMART SM00355 c2h2final6 97 119 0.0081
29 g15265.t1 SMART SM00228 pdz_new 196 264 1.8E-18
32 g15265.t1 SMART SM00109 c1_12 938 987 7.4E-11
30 g15265.t1 SMART SM00325 RhoGEF_3 1226 1409 5.2E-44
31 g15265.t1 SMART SM00233 PH_update 1447 1556 0.009
13 g15265.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 8 59 1.71E-7
12 g15265.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 67 119 3.25E-10
10 g15265.t1 SUPERFAMILY SSF50156 PDZ domain-like 182 267 4.47E-20
14 g15265.t1 SUPERFAMILY SSF48097 Regulator of G-protein signaling, RGS 692 872 6.92E-27
8 g15265.t1 SUPERFAMILY SSF57889 Cysteine-rich domain 927 990 2.39E-15
11 g15265.t1 SUPERFAMILY SSF48065 DBL homology domain (DH-domain) 1207 1421 1.7E-43
9 g15265.t1 SUPERFAMILY SSF50729 PH domain-like 1436 1554 8.21E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0035556 intracellular signal transduction BP
GO:0005085 guanyl-nucleotide exchange factor activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values