General information for g15275.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transmembrane protein 222.
Parent gene
- The parent gene g15275 is located on chr_4: 4777571..4778119 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15275 | g15275.t3 | TTS | g15275.t3 | 4777519 | 4777519 |
| chr_4 | g15275 | g15275.t3 | isoform | g15275.t3 | 4777531 | 4778119 |
| chr_4 | g15275 | g15275.t3 | exon | g15275.t3.exon1 | 4777531 | 4778119 |
| chr_4 | g15275 | g15275.t3 | cds | g15275.t3.CDS1 | 4777571 | 4777936 |
| chr_4 | g15275 | g15275.t3 | TSS | g15275.t3 | 4778190 | 4778190 |
Sequences
>g15275.t3 Gene=g15275 Length=589
ATGAATGTAACCAAAATTGACTATGATTTACATCGATATCCTTTCTGCTTAGTATGGACA
CCAATACCAATGATTACATGGTTACTTCCTTTTGTTGGTCATATGGGAATTGCAACATCA
CAAGGAATTATCAGAGATTTTGCGGGTAAGAAAAAATAATTATAAATTTTCTACAATTTT
AAAATGATTTTTTCAGGACCATATTTTGTGAGCGAGGATCAAATGGGTTTTGGCTGGCCA
ACACGATATTTACAATTAAATATAGACAAAGTAGAAGGTGGAGCAACATCTTGGGATGAT
GCAGTTCAAAAAGCATCAGCTGAATACACAAAGCGAATGCACAATCTTTTTTGGGATAAC
TGTCATTCACATTGCGGCATGGCATTGACTATAATGCGATATGGAGGCAGTAGTTGGTGG
AGTATGGTCAAACTTGCTGCTTGGATGTTTTTCTTTGGCAAATATGTTGGTTTTTGGGGA
TTTGTCAAAACTTGGCTGCCATTTGCTATAATTTTAACTTTTGCAATTTCTATGTGGAAA
TTTTTGTAAAAAAAATTTAGTCTTAATAAATCAAAAAAAAATTATTTAT
>g15275.t3 Gene=g15275 Length=121
MIFSGPYFVSEDQMGFGWPTRYLQLNIDKVEGGATSWDDAVQKASAEYTKRMHNLFWDNC
HSHCGMALTIMRYGGSSWWSMVKLAAWMFFFGKYVGFWGFVKTWLPFAIILTFAISMWKF
L
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g15275.t3 | PANTHER | PTHR20921 | UNCHARACTERIZED | 3 | 117 | 1.8E-32 |
| 1 | g15275.t3 | Pfam | PF05608 | Protein of unknown function (DUF778) | 3 | 26 | 8.8E-5 |
| 2 | g15275.t3 | Pfam | PF05608 | Protein of unknown function (DUF778) | 35 | 94 | 2.3E-13 |
| 5 | g15275.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 77 | - |
| 8 | g15275.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 78 | 97 | - |
| 7 | g15275.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 98 | 102 | - |
| 9 | g15275.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 120 | - |
| 6 | g15275.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 121 | 121 | - |
| 4 | g15275.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 94 | 116 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed