Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15324 g15324.t5 isoform g15324.t5 4969282 4970520
chr_4 g15324 g15324.t5 exon g15324.t5.exon1 4969282 4969680
chr_4 g15324 g15324.t5 cds g15324.t5.CDS1 4969283 4969680
chr_4 g15324 g15324.t5 exon g15324.t5.exon2 4969736 4969797
chr_4 g15324 g15324.t5 cds g15324.t5.CDS2 4969736 4969797
chr_4 g15324 g15324.t5 exon g15324.t5.exon3 4969891 4970050
chr_4 g15324 g15324.t5 cds g15324.t5.CDS3 4969891 4970050
chr_4 g15324 g15324.t5 exon g15324.t5.exon4 4970394 4970520
chr_4 g15324 g15324.t5 cds g15324.t5.CDS4 4970394 4970520
chr_4 g15324 g15324.t5 TSS g15324.t5 4970558 4970558
chr_4 g15324 g15324.t5 TTS g15324.t5 NA NA

Sequences

>g15324.t5 Gene=g15324 Length=748
ATGCCTGCAGTTTCAAAACAATTAAGTGATCTTGATGTAGAAAGAACATTTGTAAATTTT
AACACTGAAGAATTCACAAATTGGTATTATGGTGGTGCTGAAAAAGTTGCTAAAAAGAGA
TTTCTAGAAAAGTACTTCTTATCTGATGAGAGATTAAAGCTTGAAGTTGATACAAGTTAT
CTAAGTTATAAAGAGCGATATGAAGAAGCAATGCGAAGGAGTGTTATTGTTTATGAAAAC
ATCAAAAAATTGCATAAGAAAATGAATGGAAATGACAATGACTTTTTTTCAATTTTGGAC
AATTTAAGAGCAATAACACCATGCATAAATATCGATGGAAATCCCATTATGCTTCATTAT
GGAATGTTTCCATTTGCATTTCAAACTCTTGCAAACGAAGAGCAAAGGTCAGAATGGATT
CCAAAAATCGTTGACTGTAAGGTATTTGGCACTTACGCACAAACTGAGTTAGGTCATGGA
ACTTTTGTTAGAGGCTTGGAAACAACAGCAACTTATGATCCAAAAACTAAAGAATTCATC
ATAAACACACCAAGTTTGTCAGCTTATAAATTCTGGCCAGGAAATTTAGGACATACAGCT
AACCATACAGTTGTTTTTGCTCAATTATACATACAAGGTCAATGTCATGGTGTACAACCA
TTCGTTATGAGAATTCGCGATCAAGAAACTCACAAGCCATTGCCAGGAATAAAAGTTGGT
GATATTGGAAATAAACTTGGTTTTGATA

>g15324.t5 Gene=g15324 Length=249
MPAVSKQLSDLDVERTFVNFNTEEFTNWYYGGAEKVAKKRFLEKYFLSDERLKLEVDTSY
LSYKERYEEAMRRSVIVYENIKKLHKKMNGNDNDFFSILDNLRAITPCINIDGNPIMLHY
GMFPFAFQTLANEEQRSEWIPKIVDCKVFGTYAQTELGHGTFVRGLETTATYDPKTKEFI
INTPSLSAYKFWPGNLGHTANHTVVFAQLYIQGQCHGVQPFVMRIRDQETHKPLPGIKVG
DIGNKLGFD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g15324.t5 Gene3D G3DSA:1.10.540.10 - 21 148 0
7 g15324.t5 Gene3D G3DSA:2.40.110.10 - 150 249 0
3 g15324.t5 PANTHER PTHR10909:SF250 ACYL-COENZYME A OXIDASE 9 248 0
4 g15324.t5 PANTHER PTHR10909 ELECTRON TRANSPORT OXIDOREDUCTASE 9 248 0
1 g15324.t5 Pfam PF14749 Acyl-coenzyme A oxidase N-terminal 21 148 0
2 g15324.t5 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 152 248 0
5 g15324.t5 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 112 248 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed