General information for g15371.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lysosomal thioesterase PPT2-like protein.
Parent gene
- The parent gene g15371 is located on chr_4: 5147630..5149830 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15371 | g15371.t12 | TSS | g15371.t12 | 5146872 | 5146872 |
| chr_4 | g15371 | g15371.t12 | isoform | g15371.t12 | 5147630 | 5149830 |
| chr_4 | g15371 | g15371.t12 | exon | g15371.t12.exon1 | 5147630 | 5147760 |
| chr_4 | g15371 | g15371.t12 | exon | g15371.t12.exon2 | 5149227 | 5149339 |
| chr_4 | g15371 | g15371.t12 | cds | g15371.t12.CDS1 | 5149309 | 5149339 |
| chr_4 | g15371 | g15371.t12 | exon | g15371.t12.exon3 | 5149610 | 5149830 |
| chr_4 | g15371 | g15371.t12 | cds | g15371.t12.CDS2 | 5149610 | 5149830 |
| chr_4 | g15371 | g15371.t12 | TTS | g15371.t12 | 5149938 | 5149938 |
Sequences
>g15371.t12 Gene=g15371 Length=465
CTTCATTTAATTTTTCCTACACTGGTTGCTAACAATGCTTATGAACTTTTTTATTCTCGT
CTTGGCCAAAGAACTTCAGTTGGCAATTATTGGAATGATCCCCATCAAAGACCTTTGTAT
CTTAAATATAGTAATTTTCTACCTTATGTAAATAATGAAATCTTATGTACAAATTCTTCA
CAATTTCGTGATAATCTATTAAAGCTAGAAAAAATGATTCTCATTGGTGGTCCTGATGAT
GGTGTAATAACTCCATGGGAAAGCGCACATTTTGGTTTTTATGATCAAAATTTAACAGTA
ATACCTTTAAGAGAGCGACAATTTTATGTAGAAGATGCAATTGGTTTAAAGACTTTAGAC
GAACAAAAGAAACTTGAACTTGTGACTGTTCCACATATTATACATATAGCATGGCACTTA
AATGTAACGCTCATCGATGAAATCATCGTTCCTAGATTAGACTGA
>g15371.t12 Gene=g15371 Length=83
MILIGGPDDGVITPWESAHFGFYDQNLTVIPLRERQFYVEDAIGLKTLDEQKKLELVTVP
HIIHIAWHLNVTLIDEIIVPRLD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15371.t12 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 83 | 0 |
| 2 | g15371.t12 | PANTHER | PTHR11247 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | 1 | 82 | 0 |
| 3 | g15371.t12 | PANTHER | PTHR11247:SF27 | LYSOSOMAL THIOESTERASE PPT2 | 1 | 82 | 0 |
| 1 | g15371.t12 | Pfam | PF02089 | Palmitoyl protein thioesterase | 2 | 61 | 0 |
| 4 | g15371.t12 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 1 | 68 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016790 | thiolester hydrolase activity | MF |
| GO:0008474 | palmitoyl-(protein) hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
