General information for g15429.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Luciferin 4-monooxygenase.
Parent gene
- The parent gene g15429 is located on chr_4: 5424403..5426779 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15429 | g15429.t1 | isoform | g15429.t1 | 5424403 | 5426779 |
| chr_4 | g15429 | g15429.t1 | exon | g15429.t1.exon1 | 5424403 | 5424513 |
| chr_4 | g15429 | g15429.t1 | cds | g15429.t1.CDS1 | 5424403 | 5424513 |
| chr_4 | g15429 | g15429.t1 | exon | g15429.t1.exon2 | 5424896 | 5425103 |
| chr_4 | g15429 | g15429.t1 | cds | g15429.t1.CDS2 | 5424896 | 5425103 |
| chr_4 | g15429 | g15429.t1 | exon | g15429.t1.exon3 | 5425160 | 5425432 |
| chr_4 | g15429 | g15429.t1 | cds | g15429.t1.CDS3 | 5425160 | 5425432 |
| chr_4 | g15429 | g15429.t1 | exon | g15429.t1.exon4 | 5425677 | 5426411 |
| chr_4 | g15429 | g15429.t1 | cds | g15429.t1.CDS4 | 5425677 | 5426411 |
| chr_4 | g15429 | g15429.t1 | exon | g15429.t1.exon5 | 5426475 | 5426779 |
| chr_4 | g15429 | g15429.t1 | cds | g15429.t1.CDS5 | 5426475 | 5426779 |
| chr_4 | g15429 | g15429.t1 | TSS | g15429.t1 | NA | NA |
| chr_4 | g15429 | g15429.t1 | TTS | g15429.t1 | NA | NA |
Sequences
>g15429.t1 Gene=g15429 Length=1632
ATGGAAAAAAATATAATTTATAGTGGTGAATATGAGAAAAAGTTGGAAAATATTTCATTT
GGTGAATTCATTTTGGAATCATTGAATAAAGGAGGTTATCGTGAATTTCTAATCAATGGA
GAAACTGGTCAAATTTGGACTTATGTCGACGCACTTAGAGAAACAAAAAAAATTGCAAAC
TGTCTTTATTCATTTGGAATAAAACGAAATGACAAAATTGCAATTATCTCTGAAAATCGT
CATGAAATTGCAGCAATTCATTTAGCATCTTTTTGTCTTAATTCAATTGTTGCTCCAATA
AACTTTTCATACACTTCACGAGAAATAAAACATGCGTTAAAATTATCACAACCGCGAATT
GTATTTGTGTCAAATTTATCAGCTACACCTGCCATCGATGCATACAAAGGATTAGATTTC
GTGGAAAAAATTGTTCATTTTGATAAATTATCGAGTGACGATTGTGCAATAGCACTTAAC
GACTTTGTTGCTAAATATAAAAAAAATAACTTCAACTTAGAGGAAATCGTGAATCAACCA
ATTGATATATATTCACAAAGTGCACTTATATACTTATCTAGTGGAACAACTGGTTTACCA
AAAGGTTGTGAACTCACACAAGGAAATGTTTTCTTCACTTTAAGACAATACATTGACATT
CAAGAAACATTTGAGCATTTTCAAAAATTTAATAGAATTCTTAATATTGCACCATGGTTT
CATCTTTTAGGATTTGGAAATCTATTTTTCTCAGTTATTTCAAGTCAATTTGCAAATGTT
TATTTGTCAAAATTTTGTCCAATGCTTTTCCTTCGAACAATAGAGAAATATAAAATTATA
AGTATGGTAGCACCACCACCTATTGTTCTTTTTCTTGCAAAACATCCATTAGTTGATCAA
TTTAATTTGTCAAGCTTGAGATATTTGACATCAGGTGGTGCTCCTTTGGGTAAAGAAGTT
GAAAATGAAATCAAATCAAGATTCAAGGGAAATTTACACATTTTCCAATTGTATGGAATG
ACTGAAATTCTTGCAGCGACTGTATTTTTTAAAATTGAAAATTCAGTTCAACAGTCTGTC
GGTATCATCTTGAAAGGTGTCTATGCAAAAGTTATAGACAGTAATGGTGTAACATTAGGA
CCTAATAAAGTTGGTGAATTGTGCTTTAAAGGACCAAATGTTATGAAAGGATATGTTGGT
GATCCAAAAGCAACTACTGAAACAATTGACAAAGATGGTTGGTTGCATACTGGTGATTTG
GGATATTATGATGAAAACTTTTATTTCTTTATTGTTGATCGCTTAAAAGAGTTGATTAAG
TACAAAGGTTTTCAAATTGCTCCTGCTGAAATTGAAGCCTTACTGCTTTCACATCCAAAA
ATTAAAGATGCTGGTGTTATTGGAATTCCTAATGATGTTGCTGGTGAACTTCCATTTGCA
TTTGTTGTCAAACAACCAAATATTGAATTAACTGAAGATGAAGTGAAAGATTTTATAGCA
CAAAATGCATCCAAAGAAAAATGGCTACGAGGAGGAGTGAAATTTATCGAAGAAGTACCG
AAGAATCCAAGTGGAAAAATTTTACGTAGAGAATTACGAGAAACATATAAAACCATAAAG
TCTAATTTATAA
>g15429.t1 Gene=g15429 Length=543
MEKNIIYSGEYEKKLENISFGEFILESLNKGGYREFLINGETGQIWTYVDALRETKKIAN
CLYSFGIKRNDKIAIISENRHEIAAIHLASFCLNSIVAPINFSYTSREIKHALKLSQPRI
VFVSNLSATPAIDAYKGLDFVEKIVHFDKLSSDDCAIALNDFVAKYKKNNFNLEEIVNQP
IDIYSQSALIYLSSGTTGLPKGCELTQGNVFFTLRQYIDIQETFEHFQKFNRILNIAPWF
HLLGFGNLFFSVISSQFANVYLSKFCPMLFLRTIEKYKIISMVAPPPIVLFLAKHPLVDQ
FNLSSLRYLTSGGAPLGKEVENEIKSRFKGNLHIFQLYGMTEILAATVFFKIENSVQQSV
GIILKGVYAKVIDSNGVTLGPNKVGELCFKGPNVMKGYVGDPKATTETIDKDGWLHTGDL
GYYDENFYFFIVDRLKELIKYKGFQIAPAEIEALLLSHPKIKDAGVIGIPNDVAGELPFA
FVVKQPNIELTEDEVKDFIAQNASKEKWLRGGVKFIEEVPKNPSGKILRRELRETYKTIK
SNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g15429.t1 | CDD | cd05911 | Firefly_Luc_like | 37 | 528 | 1.18906E-173 |
| 10 | g15429.t1 | Coils | Coil | Coil | 529 | 543 | - |
| 7 | g15429.t1 | Gene3D | G3DSA:3.40.50.980 | - | 45 | 354 | 5.5E-109 |
| 6 | g15429.t1 | Gene3D | G3DSA:3.40.50.980 | - | 48 | 206 | 5.5E-109 |
| 9 | g15429.t1 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 357 | 434 | 5.5E-109 |
| 8 | g15429.t1 | Gene3D | G3DSA:3.30.300.30 | - | 435 | 541 | 1.5E-31 |
| 3 | g15429.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 3 | 541 | 1.5E-151 |
| 4 | g15429.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 3 | 541 | 1.5E-151 |
| 2 | g15429.t1 | Pfam | PF00501 | AMP-binding enzyme | 34 | 441 | 4.2E-84 |
| 1 | g15429.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 450 | 526 | 2.1E-14 |
| 12 | g15429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 238 | - |
| 13 | g15429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 239 | 262 | - |
| 11 | g15429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 263 | 543 | - |
| 15 | g15429.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 190 | 201 | - |
| 5 | g15429.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 19 | 538 | 1.14E-123 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K22133 (oxalate—CoA ligase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed