Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15445 g15445.t4 isoform g15445.t4 5483242 5487046
chr_4 g15445 g15445.t4 exon g15445.t4.exon1 5483242 5483305
chr_4 g15445 g15445.t4 cds g15445.t4.CDS1 5483242 5483305
chr_4 g15445 g15445.t4 exon g15445.t4.exon2 5484535 5484670
chr_4 g15445 g15445.t4 cds g15445.t4.CDS2 5484535 5484670
chr_4 g15445 g15445.t4 exon g15445.t4.exon3 5486947 5487046
chr_4 g15445 g15445.t4 cds g15445.t4.CDS3 5486947 5487046
chr_4 g15445 g15445.t4 TSS g15445.t4 NA NA
chr_4 g15445 g15445.t4 TTS g15445.t4 NA NA

Sequences

>g15445.t4 Gene=g15445 Length=300
ATGTCAACAAAAACAGTTAGTTTCGAAGATGTAATCTATGAGGTACAAACGAAACGCAAT
TTCACAAGCAATTCATCCGTTCAAAAACAACAATTGCTTAAAGGTGTTTCTGGAATTTTT
AGACATGGTCAGCTTTCTGTAATCATGGGACCATCAGGAGCTGGCAAAAGTAGTTTACTA
AATGCTCTTTCTGGTTATAGAACAGAAGGCGTTTCAGGAACAATTTTGTTAAACCGTAAA
ACCTCATGTTATATTCAACAAGAAGACTATCACCATACACTGATCACTGTCAATGAAATG

>g15445.t4 Gene=g15445 Length=100
MSTKTVSFEDVIYEVQTKRNFTSNSSVQKQQLLKGVSGIFRHGQLSVIMGPSGAGKSSLL
NALSGYRTEGVSGTILLNRKTSCYIQQEDYHHTLITVNEM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15445.t4 Gene3D G3DSA:3.40.50.300 - 2 100 0
2 g15445.t4 PANTHER PTHR48041:SF57 FI02074P 29 99 0
3 g15445.t4 PANTHER PTHR48041 ABC TRANSPORTER G FAMILY MEMBER 28 29 99 0
1 g15445.t4 Pfam PF00005 ABC transporter 33 94 0
4 g15445.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 28 96 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed