Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15457 g15457.t14 TTS g15457.t14 5519529 5519529
chr_4 g15457 g15457.t14 isoform g15457.t14 5519531 5520701
chr_4 g15457 g15457.t14 exon g15457.t14.exon1 5519531 5519845
chr_4 g15457 g15457.t14 cds g15457.t14.CDS1 5519841 5519845
chr_4 g15457 g15457.t14 exon g15457.t14.exon2 5519933 5520098
chr_4 g15457 g15457.t14 cds g15457.t14.CDS2 5519933 5520098
chr_4 g15457 g15457.t14 exon g15457.t14.exon3 5520159 5520405
chr_4 g15457 g15457.t14 cds g15457.t14.CDS3 5520159 5520405
chr_4 g15457 g15457.t14 exon g15457.t14.exon4 5520469 5520701
chr_4 g15457 g15457.t14 cds g15457.t14.CDS4 5520469 5520623
chr_4 g15457 g15457.t14 TSS g15457.t14 NA NA

Sequences

>g15457.t14 Gene=g15457 Length=961
TGTTGGATGGTGGCAAACATATTCTTTGTGAAAAGCCTTTGACATTAAATGTAAAACAAG
CTGAACAACTTTTAAATCATGCAAAAGAGAAGAAATTATTTTGTATGGAAGCAATTTGGT
CAAGATATTTTCCAATTTATAGACAACTTAAAGCTCGTATTAACAATGGTGATCTTGGTG
ACATTAAAGAAGTTTATGCTGAATTTGGTGTTGAAATGGCAGATGTTGATCGTGAAAAAT
GAACTTGGAGGTGGTTCCACATTGGATATTGGAACCTATGCAATTCAATTTTCTCAATTT
GTCTTTCGTGCTGAACCGACATCAATTAAAGCAACTGGCAAATTAAATGAAGAAGGTGTT
GATACTGAAACTGAAGTTGAATTAAAATATCCAAATGGTGGTGTTGCTCGTTATAAGACT
AATTCAACAAAAGAACTCAGCAACATTGCAACTGTAACAGGAAGCAAAGGCACAATGAAG
CTCCATACTTTCTGGTGTCCAACTGAATTAGAAGATGTTGATGGTCAAATGAAAAAATTC
GAATTACCACAAAATCGACTTGGTAAATTTATTTACTTCCATGGTGCTGGCATGCGATAT
GAAGCAGAAGAAGTAAGAAGATGCATCAATGAAGGTTTGACTGAAAACTGAAATTTAATG
GAAACTAAATTATGAAATGGATCTCTTGAAATGTGACATGATAAGCAAAGAAATAAGAAA
ATTGTTAGTTTTGTATAAATATTGAATTATGAGGAAGAGAAGAAATACCAAAAATGTCCC
AAAAAATTAATATATTTCATAATATCCGAACGAAATTTTTTTCATTCCTGTAATATTTTG
TTTGGTTATATTTAATTATTTGAACGTCGATATATTTTTAAGTTTTATTTTAATCTATTA
TTTTGTATGCACGAATGAAATTCATTTATCATAACAATAAAATAAAATTACATATTTTGC
A

>g15457.t14 Gene=g15457 Length=190
MQKRRNYFVWKQFGQDIFQFIDNLKLVLTMVILVTLKKFMLNLVLKWQMLIVKNELGGGS
TLDIGTYAIQFSQFVFRAEPTSIKATGKLNEEGVDTETEVELKYPNGGVARYKTNSTKEL
SNIATVTGSKGTMKLHTFWCPTELEDVDGQMKKFELPQNRLGKFIYFHGAGMRYEAEEVR
RCINEGLTEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15457.t14 Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 44 190 1.2E-31
2 g15457.t14 PANTHER PTHR22604 OXIDOREDUCTASES 46 189 1.2E-33
3 g15457.t14 PANTHER PTHR22604:SF105 TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE 46 189 1.2E-33
1 g15457.t14 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 47 153 4.4E-7
7 g15457.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 25 -
8 g15457.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 26 45 -
6 g15457.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 46 190 -
4 g15457.t14 SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 46 184 3.6E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed