Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_4 | g15457 | g15457.t22 | TTS | g15457.t22 | 5519529 | 5519529 |
chr_4 | g15457 | g15457.t22 | isoform | g15457.t22 | 5519531 | 5521775 |
chr_4 | g15457 | g15457.t22 | exon | g15457.t22.exon1 | 5519531 | 5520098 |
chr_4 | g15457 | g15457.t22 | exon | g15457.t22.exon2 | 5520159 | 5520405 |
chr_4 | g15457 | g15457.t22 | cds | g15457.t22.CDS1 | 5520293 | 5520405 |
chr_4 | g15457 | g15457.t22 | exon | g15457.t22.exon3 | 5520471 | 5520755 |
chr_4 | g15457 | g15457.t22 | cds | g15457.t22.CDS2 | 5520471 | 5520755 |
chr_4 | g15457 | g15457.t22 | exon | g15457.t22.exon4 | 5521571 | 5521775 |
chr_4 | g15457 | g15457.t22 | cds | g15457.t22.CDS3 | 5521571 | 5521775 |
chr_4 | g15457 | g15457.t22 | TSS | g15457.t22 | 5521865 | 5521865 |
>g15457.t22 Gene=g15457 Length=1305
ATGGCACCATTACGTTGGGGAATTGCATCAGCTGGTAAAATTTCAAATGACTTTTGTGCA
GCTTTATCAACATATTCTCAAGATGATCATCAGGTCGTCGCGGTTGCGGCTCGCTCATTG
GAGGATGCAAAGGAATTTGCAGAAACATTCAATATTCCTAGGACTCATGAAGGTTACCAA
AAATTAGCTCAGGATCCAGAAGTTGATGTTGTTTATATTGGATCTATTAATACCACACAT
CTTGAAATTGGTTTAATGATGTTGGATGGTGGCAAACATATTCTTTGTGAAAAGCCTTTG
ACATTAAATGTAAAACAAGCTGAACAACTTTTAAATCATGCAAAAGAGAAGAAATTATTT
TGTATGGAAGCAATTTGGTCAAGATATTTTCCAATTTATAGACAACTTAAAGCTCGTATT
AACAATGGTGATCTTGGTGACATTAAAGAAGTTTATGCTGAATTTGGTGTTGAAATGGCA
GATGTTGATCGAAAAATGAACTTGGAGGTGGTTCCACATTGGATATTGGAACCTATGCAA
TTCAATTTTCTCAATTTGTCTTTCGTGCTGAACCGACATCAATTAAAGCAACTGGCAAAT
TAAATGAAGAAGGTGTTGATACTGAAACTGAAGTTGAATTAAAATATCCAAATGGTGGTG
TTGCTCGTTATAAGACTAATTCAACAAAAGAACTCAGCAACATTGCAACTGTAACAGGAA
GCAAAGGCACAATGAAGCTCCATACTTTCTGGTGTCCAACTGAATTAGAAGATGTTGATG
GTCAAATGAAAAAATTCGAATTACCACAAAATCGACTTGGTAAATTTATTTACTTCCATG
GTGCTGGCATGCGATATGAAGCAGAAGAAGTAAGAAGATGCATCAATGAAGGTTTGACTG
AAAGTGAAGATGCAACACATAATGACAGTCTTGTCATTGCTCGTATTCGTGATGAAATTC
GTAGACAACTTGGTGTTAAATTTGATGAAGACTGAAATTTAATGGAAACTAAATTATGAA
ATGGATCTCTTGAAATGTGACATGATAAGCAAAGAAATAAGAAAATTGTTAGTTTTGTAT
AAATATTGAATTATGAGGAAGAGAAGAAATACCAAAAATGTCCCAAAAAATTAATATATT
TCATAATATCCGAACGAAATTTTTTTCATTCCTGTAATATTTTGTTTGGTTATATTTAAT
TATTTGAACGTCGATATATTTTTAAGTTTTATTTTAATCTATTATTTTGTATGCACGAAT
GAAATTCATTTATCATAACAATAAAATAAAATTACATATTTTGCA
>g15457.t22 Gene=g15457 Length=200
MAPLRWGIASAGKISNDFCAALSTYSQDDHQVVAVAARSLEDAKEFAETFNIPRTHEGYQ
KLAQDPEVDVVYIGSINTTHLEIGLMMLDGGKHILCEKPLTLNVKQAEQLLNHAKEKKLF
CMEAIWSRYFPIYRQLKARINNGDLGDIKEVYAEFGVEMADVDRKMNLEVVPHWILEPMQ
FNFLNLSFVLNRHQLKQLAN
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
5 | g15457.t22 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 123 | 0e+00 |
6 | g15457.t22 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 124 | 179 | 9e-07 |
2 | g15457.t22 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 2 | 167 | 0e+00 |
3 | g15457.t22 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 2 | 167 | 0e+00 |
1 | g15457.t22 | Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 4 | 122 | 0e+00 |
4 | g15457.t22 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 156 | 0e+00 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0016491 | oxidoreductase activity | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed