General information for g15457.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g15457 is located on chr_4: 5520793..5521775 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15457 | g15457.t5 | isoform | g15457.t5 | 5519505 | 5520469 |
| chr_4 | g15457 | g15457.t5 | exon | g15457.t5.exon1 | 5519505 | 5520098 |
| chr_4 | g15457 | g15457.t5 | TTS | g15457.t5 | 5519529 | 5519529 |
| chr_4 | g15457 | g15457.t5 | cds | g15457.t5.CDS1 | 5519841 | 5520098 |
| chr_4 | g15457 | g15457.t5 | exon | g15457.t5.exon2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t5 | cds | g15457.t5.CDS2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t5 | exon | g15457.t5.exon3 | 5520464 | 5520469 |
| chr_4 | g15457 | g15457.t5 | cds | g15457.t5.CDS3 | 5520464 | 5520465 |
| chr_4 | g15457 | g15457.t5 | TSS | g15457.t5 | NA | NA |
Sequences
>g15457.t5 Gene=g15457 Length=847
TGTAATGAAAAATGAACTTGGAGGTGGTTCCACATTGGATATTGGAACCTATGCAATTCA
ATTTTCTCAATTTGTCTTTCGTGCTGAACCGACATCAATTAAAGCAACTGGCAAATTAAA
TGAAGAAGGTGTTGATACTGAAACTGAAGTTGAATTAAAATATCCAAATGGTGGTGTTGC
TCGTTATAAGACTAATTCAACAAAAGAACTCAGCAACATTGCAACTGTAACAGGAAGCAA
AGGCACAATGAAGCTCCATACTTTCTGGTGTCCAACTGAATTAGAAGATGTTGATGGTCA
AATGAAAAAATTCGAATTACCACAAAATCGACTTGGTAAATTTATTTACTTCCATGGTGC
TGGCATGCGATATGAAGCAGAAGAAGTAAGAAGATGCATCAATGAAGGTTTGACTGAAAG
TGAAGATGCAACACATAATGACAGTCTTGTCATTGCTCGTATTCGTGATGAAATTCGTAG
ACAACTTGGTGTTAAATTTGATGAAGACTGAAATTTAATGGAAACTAAATTATGAAATGG
ATCTCTTGAAATGTGACATGATAAGCAAAGAAATAAGAAAATTGTTAGTTTTGTATAAAT
ATTGAATTATGAGGAAGAGAAGAAATACCAAAAATGTCCCAAAAAATTAATATATTTCAT
AATATCCGAACGAAATTTTTTTCATTCCTGTAATATTTTGTTTGGTTATATTTAATTATT
TGAACGTCGATATATTTTTAAGTTTTATTTTAATCTATTATTTTGTATGCACGAATGAAA
TTCATTTATCATAACAATAAAATAAAATTACATATTTTGCATTAATTATCATGATTTTAC
ACAAGGC
>g15457.t5 Gene=g15457 Length=168
MKNELGGGSTLDIGTYAIQFSQFVFRAEPTSIKATGKLNEEGVDTETEVELKYPNGGVAR
YKTNSTKELSNIATVTGSKGTMKLHTFWCPTELEDVDGQMKKFELPQNRLGKFIYFHGAG
MRYEAEEVRRCINEGLTESEDATHNDSLVIARIRDEIRRQLGVKFDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15457.t5 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 1 | 168 | 0e+00 |
| 2 | g15457.t5 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 2 | 166 | 0e+00 |
| 3 | g15457.t5 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 2 | 166 | 0e+00 |
| 1 | g15457.t5 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 2 | 134 | 6e-07 |
| 4 | g15457.t5 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 2 | 133 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
