General information for g15485.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15485 is located on chr_4: 5611152..5612402 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15485 | g15485.t13 | TSS | g15485.t13 | 5611121 | 5611121 |
| chr_4 | g15485 | g15485.t13 | isoform | g15485.t13 | 5611152 | 5612402 |
| chr_4 | g15485 | g15485.t13 | exon | g15485.t13.exon1 | 5611152 | 5612020 |
| chr_4 | g15485 | g15485.t13 | cds | g15485.t13.CDS1 | 5611152 | 5611478 |
| chr_4 | g15485 | g15485.t13 | exon | g15485.t13.exon2 | 5612178 | 5612252 |
| chr_4 | g15485 | g15485.t13 | exon | g15485.t13.exon3 | 5612311 | 5612402 |
| chr_4 | g15485 | g15485.t13 | TTS | g15485.t13 | 5612514 | 5612514 |
Sequences
>g15485.t13 Gene=g15485 Length=1036
ATGAAATTATTTATTTTTTTAATTTTTTCTATAAGTTCTGCACTTTGTCTTGTGCCAGTG
AAAGAAGGATGGAAATTAGTAAAATCACCTTTAGATAGTCCACATTTTCATGACGTTATG
GAAAAAATTTATTCAAATATTCCTGCAGCAAAACCAAATGTAAGAAGTGGAAGAATTGCT
GGTGGTGAACTTGCTTCTCTTGGTCAATTTCCTCATCTTGTGCTGCTTTACAATGTTGAT
AAATTTGGTGACACTTATATTTGTGGAAGCAGCATTATTAGTCATAATTGGTTACTTACT
GCCGGTATGGAAAAAATATACAATTGATTTCTTAAAACTTTATCTTTTAAATCAAAAGTT
TTTCATTTTTCCAACATTTTTAATATAAAATGTTAAAATTTTAAAATCACGAATTTATTT
TAATTTTCCTCAAAGGTCATTGCCTCCATGAAATTTCTTATACAACAGTTTATGCTGGAA
TTATTAATAGAATACTTGGGCCAGCAGTTTGGTCACGAGAAGTCACAGCTGCGTCGGGAA
ATTTCATTTTCCATGAAGAATACAAAGGAGTACAAAATGACATCGCTTTAATTCGACTTG
TTACTTCAATTCCAAGTCATCCACATGTTGGAAATATTGCATTACCACGAAGAAGTGATG
CAAGTGTTGTTCTTGATGGAAAAATGGCAACAGTTGCAGGATTTGGAAGAATAAATGATG
TTCAAATGCAACCATCAGAACATTTAAGATTTATGTCACAACCAATTTATCCAAATAGTA
AATGTGAAACGGTTTTTGGTAAAGTTAATGTTAGAGATACAAATTTATGCTTAAGTGGTG
CAAATGGAAAATCAACATGTCAAGGTTAGGTGGACCATTGGTAACTGAAATTGCGCCTGG
AAGAAATGTTTTAGTAGGAATTGTTAGTTTTGGTGCCGAATCAGGTTGCACTTTAGGACA
TCCACTAGTGTTCACACGTGTGGCTTCTTATCTTGATTGGATTGAAAAGATAACCGGCAT
TTATATTTACGATTGA
>g15485.t13 Gene=g15485 Length=108
MKLFIFLIFSISSALCLVPVKEGWKLVKSPLDSPHFHDVMEKIYSNIPAAKPNVRSGRIA
GGELASLGQFPHLVLLYNVDKFGDTYICGSSIISHNWLLTAGMEKIYN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g15485.t13 | Gene3D | G3DSA:2.40.10.10 | - | 59 | 103 | 2.5E-9 |
| 1 | g15485.t13 | Pfam | PF00089 | Trypsin | 59 | 102 | 7.2E-5 |
| 6 | g15485.t13 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 7 | g15485.t13 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 8 | g15485.t13 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 11 | - |
| 9 | g15485.t13 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 16 | - |
| 5 | g15485.t13 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 108 | - |
| 2 | g15485.t13 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 51 | 102 | 7.43E-13 |
| 3 | g15485.t13 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed