General information for g15486.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15486 is located on chr_4: 5612651..5614542 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15486 | g15486.t1 | isoform | g15486.t1 | 5612651 | 5614542 |
| chr_4 | g15486 | g15486.t1 | exon | g15486.t1.exon1 | 5612651 | 5613098 |
| chr_4 | g15486 | g15486.t1 | cds | g15486.t1.CDS1 | 5612651 | 5613098 |
| chr_4 | g15486 | g15486.t1 | exon | g15486.t1.exon2 | 5613155 | 5614542 |
| chr_4 | g15486 | g15486.t1 | cds | g15486.t1.CDS2 | 5613155 | 5614542 |
| chr_4 | g15486 | g15486.t1 | TSS | g15486.t1 | NA | NA |
| chr_4 | g15486 | g15486.t1 | TTS | g15486.t1 | NA | NA |
Sequences
>g15486.t1 Gene=g15486 Length=1836
ATGAAGTTATTACAGATACTCCTTACTTGTATAATTTCAATAGCTACAGCAGAAATCAAT
ATTGAATTTAAAAATTATTCTTTTCTATCTCGTGCCCTTTGTGATGTTGTGGAAAATGTC
CTTACTGATCTCGCAGTGACTTTGAATGTTGTTTCAATTAATAGCAATCACGCCAGCAAT
GATTTTAGAGACAATTTTATAAATGAAGTTACAAAAAATCCTACAATGTTGATTCGACAG
CAGAAACTTGATAAATTGGATTCACTCGGTACACGAGGTCCAAGAAAAACTAATCTTTTG
CCACTTCAAACATTTGAAGATTTTATGAATTTTTATTCAAAAATCAATGATGAACATTTT
GTCAAACGTGGACTTTATATTTTTGTACTGACAAATGGACGATTTAAAGAGACTGAAGAA
ATGTTTGTACTTTTTTGGAAATTACAAATTTACAATGTGAATGTGATTTATGAAGATAAT
GAAAGACTTTTAGTTGAGACATTTTTTCCATTCAGTTCACAAACAAATTGCTCAAATACA
AATCCAGTTGTCATCAATGAATACAAGCTGACAAATTTTACTCTTGATATTAAAGACTTT
TTCCCAAATAAAATGAATAATCTCAAAAAGTGTTCCGTGCGGGTTGCTACAGCAAATAAT
TCTATACCTTATATTTTTATAAAGACAATGTTTGATGGAAAGAAGCAATTATATGGACGC
GATTATGATTTTATACAAACACTAGCACAGAGACTGAATTTTAGAATAAATTTTACATAT
ATCGGAAGGGAAGGATATATTTTTAATAATGGTACTGCTGGTGGCACATTTCCTTTTTTA
TTAAACAATCAAGCTGATTTTACAGTAGCAGATTGTTGGTTAAAAGCAAATCGTTTAAAT
TATTTTGATGCTTCAACGCCCTACATTAATGAAAAGCTTGCCTTTGTCATTCCAATAGGC
AGTCAATTGTCATCACTTGAAAAACTTGTTTATCCATTGACATTTATGACGTGGATGACA
CTTATTGCTTGTTTTATTATTGGTTCTATTGTCATTTTTGTCATCAAACTTCAATCGAAA
ACAATTCAGAATTTTGTTTTTGGAACTCATGTGAAATATCCATATTTTAATTTATGGATT
GGACTTATTGGAACACTTCAACATCGATTACCAGGCAGAAATTTCTCAAGATTTATTCTA
ACTCTTTTTTTAATCTTTTGCCTCATTATTAGAACTGCATATTTAGGTAAAATGTATCAA
TTCATACAATCAAATAAGAAACATTCCGAACCACAAACAATTAAGGAAATGATTGAAAGA
AAATATACATTTACATTGATGAATAATTATGCTGATATTGTAATTGATAAAAAACGTTTT
AGAACAGTTGACATGAGAGAAATTGGAATAGATTTATTTGAATGGGCAAAACAAATAAAA
AGTGATCAAAAAAATACAATTTTGGTTCCATATACTTCAGTTTATTACAAAATAATTATT
AATAACACATTTAATTTGATGATTTGTAAGGAACATTTTATGACAATTCCAACTGTTGTT
TATACAAGAAAAAATTTCTACCTACTTGGAGCAATAAACGATCAAATAGAAGAATTTAAA
TCAGCTGGATTGATTGAATATTGGCATTCACTTGCATTTGATAAAAAGTATATGAAGGTG
GATAATGATAAACATCCCAAAGTTCTTACTATTGGGCACTTATCTGGAGTTTTTGAATTA
TTGATATTTGGATATATCATCAGTTTAATTACTTTCATTTTTGAATTTTTATATGCAAAA
TGGGAAAAATATAAAAAGCGCCTGAATCATACATAA
>g15486.t1 Gene=g15486 Length=611
MKLLQILLTCIISIATAEINIEFKNYSFLSRALCDVVENVLTDLAVTLNVVSINSNHASN
DFRDNFINEVTKNPTMLIRQQKLDKLDSLGTRGPRKTNLLPLQTFEDFMNFYSKINDEHF
VKRGLYIFVLTNGRFKETEEMFVLFWKLQIYNVNVIYEDNERLLVETFFPFSSQTNCSNT
NPVVINEYKLTNFTLDIKDFFPNKMNNLKKCSVRVATANNSIPYIFIKTMFDGKKQLYGR
DYDFIQTLAQRLNFRINFTYIGREGYIFNNGTAGGTFPFLLNNQADFTVADCWLKANRLN
YFDASTPYINEKLAFVIPIGSQLSSLEKLVYPLTFMTWMTLIACFIIGSIVIFVIKLQSK
TIQNFVFGTHVKYPYFNLWIGLIGTLQHRLPGRNFSRFILTLFLIFCLIIRTAYLGKMYQ
FIQSNKKHSEPQTIKEMIERKYTFTLMNNYADIVIDKKRFRTVDMREIGIDLFEWAKQIK
SDQKNTILVPYTSVYYKIIINNTFNLMICKEHFMTIPTVVYTRKNFYLLGAINDQIEEFK
SAGLIEYWHSLAFDKKYMKVDNDKHPKVLTIGHLSGVFELLIFGYIISLITFIFEFLYAK
WEKYKKRLNHT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g15486.t1 | Gene3D | G3DSA:3.40.190.10 | - | 236 | 567 | 1.2E-35 |
| 12 | g15486.t1 | Gene3D | G3DSA:3.40.190.10 | - | 312 | 518 | 1.2E-35 |
| 11 | g15486.t1 | Gene3D | G3DSA:1.10.287.70 | - | 322 | 595 | 1.2E-35 |
| 2 | g15486.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 115 | 603 | 1.1E-68 |
| 3 | g15486.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 115 | 603 | 1.1E-68 |
| 1 | g15486.t1 | Pfam | PF00497 | Bacterial extracellular solute-binding proteins, family 3 | 213 | 542 | 2.1E-8 |
| 18 | g15486.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 19 | g15486.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 20 | g15486.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 12 | - |
| 24 | g15486.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 16 | g15486.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 328 | - |
| 23 | g15486.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 355 | - |
| 15 | g15486.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 356 | 397 | - |
| 22 | g15486.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 398 | 416 | - |
| 17 | g15486.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 417 | 576 | - |
| 21 | g15486.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 577 | 598 | - |
| 14 | g15486.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 599 | 611 | - |
| 9 | g15486.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 210 | 550 | 2.76E-25 |
| 10 | g15486.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
| 5 | g15486.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 357 | - |
| 7 | g15486.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 364 | 383 | - |
| 8 | g15486.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 398 | 415 | - |
| 4 | g15486.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 487 | 509 | - |
| 6 | g15486.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 577 | 599 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed