General information for g155.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable multidrug resistance-associated protein lethal(2)03659.
Parent gene
- The parent gene g155 is located on chr_3: 1416897..1423382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g155 | g155.t1 | isoform | g155.t1 | 1413944 | 1423382 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon1 | 1413944 | 1414217 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS1 | 1413944 | 1414217 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon2 | 1414396 | 1415038 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS2 | 1414396 | 1415038 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon3 | 1415237 | 1415470 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS3 | 1415237 | 1415470 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon4 | 1416369 | 1416519 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS4 | 1416369 | 1416519 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon5 | 1416587 | 1416956 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS5 | 1416587 | 1416956 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon6 | 1417852 | 1418045 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS6 | 1417852 | 1418045 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon7 | 1418114 | 1418281 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS7 | 1418114 | 1418281 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon8 | 1418368 | 1419395 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS8 | 1418368 | 1419395 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon9 | 1419460 | 1419676 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS9 | 1419460 | 1419676 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon10 | 1420629 | 1420836 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS10 | 1420629 | 1420836 |
| chr_3 | g155 | g155.t1 | exon | g155.t1.exon11 | 1423072 | 1423382 |
| chr_3 | g155 | g155.t1 | cds | g155.t1.CDS11 | 1423072 | 1423382 |
| chr_3 | g155 | g155.t1 | TSS | g155.t1 | 1423789 | 1423789 |
| chr_3 | g155 | g155.t1 | TTS | g155.t1 | NA | NA |
Sequences
>g155.t1 Gene=g155 Length=3798
ATGAATGATATCAACGATGATTACATCCGAAAGCACGCGGAGGAGCGCGCAAACTTTATT
TCAAAAATCACGTTTTTCTGGCTCATTGACCTCTTTAAACTTGGTCAAAAATATCAAATC
ACAGCCAATGATGATATTTTTGGTATTCGTCGTGATGACGCGAGTGCAAAATTGTCAAAA
ATATTTTCCGCATTATGGAAGAGTGAATTAAGTAATGGTGGGAATAGCTTATGGCGAGTT
ATTCGAAAAGTTTATGGTCTTCGAGTAGCTTTTTGTGGTTTGACATTTTCGATTGTGGAT
ACAATTTTTAGGTTACTTCAACCACAATTTTTGGGCGCATTTATAAGCTTTTTTGTGCCA
AATCAAACAAGCGTAAGCACGAGTCAAGCCATTTACTTCGCAGCTGGTACTATTTCATGT
TCCCTCATACCTGTTTTAGTGTTTCATCCATTCTTTTTGTATACTTTAAACATTGGACAA
CGCATTCGAATAGCATGTTGCTCTTTGCTATACAAGAAGGTGTTGAAATTGTCAAAAAAT
TCCACTCAATTTCACATAATTGTGACGAATCTTATATCACGCGATATGAACAAACTCGAC
TATGCTATTGCAACATGTCATGAAATTTATAGGATACCACTTGAAGCACTATTCATTGCA
TATTTCATTTACAAAGAGACTGGCATAGTTGGACTTTTTGGCATCATCTCAATGATAGCG
TTTGTCCCATTATTATTCTACATCATAAAGCGATCGACAATTTATCGCTTGCGGGCAGCT
CAGCATACAGAAAGTCGTGTTCATTTGATGGGCGAAATTATCAAACGAATTGCAACCATA
AAAACATTTTGTATGGAACAAATTTACGCAAAGATGATTAAGGAACGCAGACTGAATGAA
ATTGAAATGGTTCGTGGTGTATTGTATCTTCGGGCAACTTCTGTCTCGTTAAATTTTCTT
CTTAAATTTTCAATTTTTGTATGTATTGCAAGTGCATTAAGTTGGGATAATCATTTGAAT
GCTAGCAGTGTTTATATTGTTATATCATATTATACCATGTTGTTCACATCTATGTTACAA
TTTTGGCCTTTATTAGTGACAAATGCTATGGATGCTTACCATACAATCGAAAGAGTACAA
GAAGTTCTTTTAACATTCAACATTTCCAATAAAAAAGAAGAAAAAGATAGTTCAGAAATT
TCTCAAGATGTAGCTTTAACAGAAAAACTCATGCCAGATCAAAAGTCAAAATCAGCACAA
AGAAGAATCAATGAAGAAAGTGACATTAAGGGAATTCAAATTAAAAATTTAATTACACAA
TTGAATGTAAAATGCAATCATCTTGAGATTAATGAAAATAAATCTTATGCACTTGTGAAT
TCAGCATCGACACTTATTGAAGTTCTCATTGGTGAAGTTGAGATTGAATCTGGTGATATT
GAAATAAATGGCAGCATCAGTTATGCATCAAAGAGTCCTTGGATATTTGCTGGAAGCATC
AGAGAGAACATAACTTTTACAGAGCAATTCGATGTCGAGAGATACTCGATGATATTGAAG
CTTTTTGAAATTGAAAAAGAAATTCAAGCTCTGCCAAATGGCGATGATACTTTAGTTGAC
GAGTTTTGCTTGAGTGACAGCTTTAAGATGCGAATACATCTCGCCAGATGTTTGTATAGA
AATGCCGATATTTACGTTATTGACAATTGCTTTTCAGATATAGCAACAAATCAAGTTGCA
GAGGCTTTTGAAAAGATATTTAAGAACAAAATATCATTAATTGCCACAAATCAACAACAT
GTCATAAATCAGACAAGTGAAATAATTTCTGTCCAAGACAACTCAATAAATATTATCGGA
TTATCGAAAGACTTTACTCTGTCCGAAACAAAAAACACCAATGAGGATTGTATTTCTACA
GAAATCACTAGGAAACAAAGTTCAAACTCATTTGTCGTACATCAAGAAAATTCAGAGAAT
CAAATTAGCGAAAGCATTGAATGGAGCAGCTATAGAAAGTACCTAAAGTCTATAAGTGGT
AGCAAATGCGGTATTTTATGGCTCATAATTCTATTTATATTCGCTCAACTGAACACGAGC
GGATTAGAGCTATTCATATCGAAGTGGCTCAATCATGTGGAAATGGTGCCGTATCGACAT
GTGCTGAGTGTGAATTTCACGGCAAAAAATAATAACAGTACTTTCCGAGAAAATGAGGCA
TTTGTGAGCAATTATGATAATTGGGTCAATTTTGTCTATTTCTATTCAATTATCCTTTGC
ACGTTGCTTTATTTCACGGTGCATCGATCATTTTTGTTCTTCAAATTGTGCCTTCGTGCC
AGTGTTCTCATTCACGATCGACTTTTTTGCGGCATTACAAGAGCTACCATGAGATTTTTT
CAATGCAATTCATTACGACAAATTCTGAATCATTTTACAGCAGACATCGAAAAATTAGAC
AATCAAGTACCGATAACAATTTACGATTCAATTGCTTTCTTGTTCGAAACAGTTGGCATT
TTTATACTCATCACACTTGTTAATTATTGGCTTTTGTTGCCGACACTCATTCTACTGTTT
GCAGTGTTTACATTTCGTTCATGCTACACCGATACAGCACGAAGTCTCCGTCGTGTCGAG
TCATTAACTCACAACTCTATTCATTCTCGGCTCATTTCGACATTTCATGGATTATCAACA
ATTCGCTCAACACATTCTGAGAAAATTTTGATGGATGAGTTTCATCGTAATATGGATCTT
AATACGTCGGCAATGTATCTAAATTTGGCCGCAACGCGAGCATTTGCCTTATGGCTCGAT
ATCATGTGTTGTGTCTACATATGTGTTGTAATATTAAGTTTTCTATTATTCAAAAGTGAA
GGCATTCGACAGACAGTTGAAGTTGGTCACAATATGATATCGGTTGAAAAAATTTTTCGT
TATCAATACATTACAACAGAACCACAATTTCGAACACCTAATAAACATCGACCTTCAAAA
AATTGGCCACAAAGTGCAAAAATTATTTTCAATAATTTCCATCTGCGTTACACATCAAGT
GGCAATGATGTTCTTAAAGATTTAAGTTTCAAAATTCATTCGGGCGAAAAGATTGGTATT
GTGGGTGAAACAAAGACAGGTAAAAGTTCTATTGTACAGGCTCTATTACGTTTTGCTTTC
AATGAAGGAACCATTGAAATTGATGACATAAATATTGAAACTCTGGGTATTCATGATCTT
CGTAGATGCTTTGGGATAATTCCACAAAATCCTATTCTTTTTGAAGGATCAATACGTTGT
AATTTAGATCCGTTAGAGCAGAATACAGATGAAAATATTTGGAATGCACTGGAGCGTGTT
GGAATTAAGGAAAATATTTTGAATGTTGTTGGTGGTTTAAGTTCTTCAGCGAATGAGCAA
ATACTTAATGTTAAAAAAATGCAACTTTTTTACATCGCACGTGCTTTTCTTGCTAAAAAT
AAAATTTTAATTCTGGATGAAACAACAGATGTGCTAAAGATTGATGATGCTAATGAAATT
CAAGATGTTATTCGTCGAAACTTTTCCAACTGTACGATAATGGTCATTTCGCAACGTCTT
GAAAGTATAATGGATTGTGATAATATCATTGTGCTTGATGATGGAAGAATTGTCGAGTTT
GGTCATCCTTATGAATTAATACAAATCTCAAGGGGTCAATTTAGGTCTATGATTGATAGA
ACTGGATATGCGAATGCTATGAATTTAATTAAGATGGCAGAGAGAAGTTATTTTACCAAA
AAAACATTAACAACTTAA
>g155.t1 Gene=g155 Length=1265
MNDINDDYIRKHAEERANFISKITFFWLIDLFKLGQKYQITANDDIFGIRRDDASAKLSK
IFSALWKSELSNGGNSLWRVIRKVYGLRVAFCGLTFSIVDTIFRLLQPQFLGAFISFFVP
NQTSVSTSQAIYFAAGTISCSLIPVLVFHPFFLYTLNIGQRIRIACCSLLYKKVLKLSKN
STQFHIIVTNLISRDMNKLDYAIATCHEIYRIPLEALFIAYFIYKETGIVGLFGIISMIA
FVPLLFYIIKRSTIYRLRAAQHTESRVHLMGEIIKRIATIKTFCMEQIYAKMIKERRLNE
IEMVRGVLYLRATSVSLNFLLKFSIFVCIASALSWDNHLNASSVYIVISYYTMLFTSMLQ
FWPLLVTNAMDAYHTIERVQEVLLTFNISNKKEEKDSSEISQDVALTEKLMPDQKSKSAQ
RRINEESDIKGIQIKNLITQLNVKCNHLEINENKSYALVNSASTLIEVLIGEVEIESGDI
EINGSISYASKSPWIFAGSIRENITFTEQFDVERYSMILKLFEIEKEIQALPNGDDTLVD
EFCLSDSFKMRIHLARCLYRNADIYVIDNCFSDIATNQVAEAFEKIFKNKISLIATNQQH
VINQTSEIISVQDNSINIIGLSKDFTLSETKNTNEDCISTEITRKQSSNSFVVHQENSEN
QISESIEWSSYRKYLKSISGSKCGILWLIILFIFAQLNTSGLELFISKWLNHVEMVPYRH
VLSVNFTAKNNNSTFRENEAFVSNYDNWVNFVYFYSIILCTLLYFTVHRSFLFFKLCLRA
SVLIHDRLFCGITRATMRFFQCNSLRQILNHFTADIEKLDNQVPITIYDSIAFLFETVGI
FILITLVNYWLLLPTLILLFAVFTFRSCYTDTARSLRRVESLTHNSIHSRLISTFHGLST
IRSTHSEKILMDEFHRNMDLNTSAMYLNLAATRAFALWLDIMCCVYICVVILSFLLFKSE
GIRQTVEVGHNMISVEKIFRYQYITTEPQFRTPNKHRPSKNWPQSAKIIFNNFHLRYTSS
GNDVLKDLSFKIHSGEKIGIVGETKTGKSSIVQALLRFAFNEGTIEIDDINIETLGIHDL
RRCFGIIPQNPILFEGSIRCNLDPLEQNTDENIWNALERVGIKENILNVVGGLSSSANEQ
ILNVKKMQLFYIARAFLAKNKILILDETTDVLKIDDANEIQDVIRRNFSNCTIMVISQRL
ESIMDCDNIIVLDDGRIVEFGHPYELIQISRGQFRSMIDRTGYANAMNLIKMAERSYFTK
KTLTT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 40 | g155.t1 | CDD | cd18579 | ABC_6TM_ABCC_D1 | 92 | 379 | 1.93144E-58 |
| 39 | g155.t1 | CDD | cd18580 | ABC_6TM_ABCC_D2 | 685 | 981 | 3.73484E-51 |
| 41 | g155.t1 | CDD | cd03244 | ABCC_MRP_domain2 | 1007 | 1223 | 2.30935E-84 |
| 15 | g155.t1 | Coils | Coil | Coil | 802 | 822 | - |
| 13 | g155.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 76 | 385 | 1.5E-10 |
| 12 | g155.t1 | Gene3D | G3DSA:3.40.50.300 | - | 400 | 655 | 1.3E-30 |
| 14 | g155.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 656 | 981 | 4.9E-19 |
| 11 | g155.t1 | Gene3D | G3DSA:3.40.50.300 | - | 991 | 1239 | 1.6E-66 |
| 5 | g155.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 12 | 1241 | 6.5E-260 |
| 6 | g155.t1 | PANTHER | PTHR24223:SF324 | LD17001P | 12 | 1241 | 6.5E-260 |
| 2 | g155.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 92 | 358 | 4.6E-11 |
| 3 | g155.t1 | Pfam | PF00005 | ABC transporter | 463 | 571 | 1.6E-5 |
| 1 | g155.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 705 | 959 | 1.1E-18 |
| 4 | g155.t1 | Pfam | PF00005 | ABC transporter | 1025 | 1169 | 8.6E-18 |
| 17 | g155.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 84 | - |
| 36 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 106 | - |
| 26 | g155.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 107 | 129 | - |
| 29 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 154 | - |
| 20 | g155.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 155 | 200 | - |
| 32 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 201 | 223 | - |
| 25 | g155.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 224 | 228 | - |
| 35 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 249 | - |
| 18 | g155.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 250 | 307 | - |
| 34 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 308 | 332 | - |
| 27 | g155.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 333 | 343 | - |
| 33 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 365 | - |
| 16 | g155.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 366 | 684 | - |
| 28 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 685 | 706 | - |
| 22 | g155.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 707 | 747 | - |
| 38 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 748 | 767 | - |
| 21 | g155.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 768 | 824 | - |
| 31 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 825 | 844 | - |
| 24 | g155.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 845 | 849 | - |
| 37 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 850 | 869 | - |
| 19 | g155.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 870 | 934 | - |
| 30 | g155.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 935 | 957 | - |
| 23 | g155.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 958 | 1265 | - |
| 54 | g155.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 93 | 361 | 21.936 |
| 57 | g155.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 423 | 638 | 8.67 |
| 55 | g155.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 704 | 952 | 20.043 |
| 56 | g155.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1008 | 1239 | 13.025 |
| 53 | g155.t1 | SMART | SM00382 | AAA_5 | 1034 | 1215 | 1.4E-8 |
| 8 | g155.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 77 | 365 | 9.55E-23 |
| 10 | g155.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 446 | 623 | 6.53E-23 |
| 7 | g155.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 674 | 981 | 1.7E-29 |
| 9 | g155.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1000 | 1237 | 1.52E-52 |
| 52 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 84 | 106 | - |
| 49 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 47 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 201 | 223 | - |
| 45 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 227 | 249 | - |
| 51 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 307 | 329 | - |
| 48 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 366 | - |
| 42 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 684 | 706 | - |
| 44 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 751 | 773 | - |
| 43 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 823 | 845 | - |
| 50 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 850 | 869 | - |
| 46 | g155.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 935 | 957 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
