Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15558 g15558.t5 TSS g15558.t5 5854417 5854417
chr_4 g15558 g15558.t5 isoform g15558.t5 5854509 5858549
chr_4 g15558 g15558.t5 exon g15558.t5.exon1 5854509 5854549
chr_4 g15558 g15558.t5 cds g15558.t5.CDS1 5854509 5854549
chr_4 g15558 g15558.t5 exon g15558.t5.exon2 5854780 5854838
chr_4 g15558 g15558.t5 cds g15558.t5.CDS2 5854780 5854838
chr_4 g15558 g15558.t5 exon g15558.t5.exon3 5855538 5855656
chr_4 g15558 g15558.t5 cds g15558.t5.CDS3 5855538 5855656
chr_4 g15558 g15558.t5 exon g15558.t5.exon4 5858114 5858210
chr_4 g15558 g15558.t5 cds g15558.t5.CDS4 5858114 5858210
chr_4 g15558 g15558.t5 exon g15558.t5.exon5 5858446 5858549
chr_4 g15558 g15558.t5 cds g15558.t5.CDS5 5858446 5858549
chr_4 g15558 g15558.t5 TTS g15558.t5 NA NA

Sequences

>g15558.t5 Gene=g15558 Length=420
ATGTCAAAAACATCAGTTTGCATCGTAGGATCAGGAAATTGGGGCTCTGCAATTGCCAAG
ATTGTCGGCGTCAATGCAAAGAATCTTCCGCAGTATGAAGATCGTGTCACAATGTACGTT
TTTGAGGAGATGATAGAAGGCAAGAAATTGACTGAAATTATCAACACAACTCATGAAAAC
GTAAAATACTTGCCGGGACACAAATTGCCTGAAAATATCGTTGCCGTTCCTGATGTTGTT
GAAGCTGCTAAAGATGCTGATATTTTGATTTTTGTTATTCCTCATCAATTTATCAAGGGC
TTGGGTGCTCAACTTGTTGGTAAAATTAGGCCAACAGCAATTGGACTTTCACTTATCAAA
GGCTTTGACATCGCTGAAGGTGGCGGAATTGAATTAATTTCAAAAATCATTACAAAACAT

>g15558.t5 Gene=g15558 Length=140
MSKTSVCIVGSGNWGSAIAKIVGVNAKNLPQYEDRVTMYVFEEMIEGKKLTEIINTTHEN
VKYLPGHKLPENIVAVPDVVEAAKDADILIFVIPHQFIKGLGAQLVGKIRPTAIGLSLIK
GFDIAEGGGIELISKIITKH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15558.t5 Gene3D G3DSA:3.40.50.720 - 1 140 0
2 g15558.t5 PANTHER PTHR11728:SF37 GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 3 138 0
3 g15558.t5 PANTHER PTHR11728 GLYCEROL-3-PHOSPHATE DEHYDROGENASE 3 138 0
4 g15558.t5 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 8 25 0
5 g15558.t5 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 70 97 0
1 g15558.t5 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 5 139 0
6 g15558.t5 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 2 138 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0009331 glycerol-3-phosphate dehydrogenase complex CC
GO:0006072 glycerol-3-phosphate metabolic process BP
GO:0046168 glycerol-3-phosphate catabolic process BP
GO:0051287 NAD binding MF
GO:0055114 NA NA
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values