Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15558 g15558.t8 TSS g15558.t8 5854417 5854417
chr_4 g15558 g15558.t8 isoform g15558.t8 5854509 5863217
chr_4 g15558 g15558.t8 exon g15558.t8.exon1 5854509 5854549
chr_4 g15558 g15558.t8 exon g15558.t8.exon2 5854780 5854830
chr_4 g15558 g15558.t8 cds g15558.t8.CDS1 5854812 5854830
chr_4 g15558 g15558.t8 exon g15558.t8.exon3 5855538 5855656
chr_4 g15558 g15558.t8 cds g15558.t8.CDS2 5855538 5855656
chr_4 g15558 g15558.t8 exon g15558.t8.exon4 5858114 5858210
chr_4 g15558 g15558.t8 cds g15558.t8.CDS3 5858114 5858210
chr_4 g15558 g15558.t8 exon g15558.t8.exon5 5858446 5858555
chr_4 g15558 g15558.t8 cds g15558.t8.CDS4 5858446 5858555
chr_4 g15558 g15558.t8 exon g15558.t8.exon6 5858609 5859076
chr_4 g15558 g15558.t8 cds g15558.t8.CDS5 5858609 5859076
chr_4 g15558 g15558.t8 exon g15558.t8.exon7 5859222 5859373
chr_4 g15558 g15558.t8 cds g15558.t8.CDS6 5859222 5859373
chr_4 g15558 g15558.t8 exon g15558.t8.exon8 5862432 5863217
chr_4 g15558 g15558.t8 cds g15558.t8.CDS7 5862432 5862462
chr_4 g15558 g15558.t8 TTS g15558.t8 5864053 5864053

Sequences

>g15558.t8 Gene=g15558 Length=1824
ATGTCAAAAACATCAGTTTGCATCGTAGGATCAGGAAATTGGGGCTCTGCAATTGCCAAG
ATTGTCGGCGTCAATGCAAAGAATCTTCCGCAATCGTGTCACAATGTACGTTTTTGAGGA
GATGATAGAAGGCAAGAAATTGACTGAAATTATCAACACAACTCATGAAAACGTAAAATA
CTTGCCGGGACACAAATTGCCTGAAAATATCGTTGCCGTTCCTGATGTTGTTGAAGCTGC
TAAAGATGCTGATATTTTGATTTTTGTTATTCCTCATCAATTTATCAAGGGCTTGGGTGC
TCAACTTGTTGGTAAAATTAGGCCAACAGCAATTGGACTTTCACTTATCAAAGGCTTTGA
CATCGCTGAAGGTGGCGGAATTGAATTAATTTCAAAAATCATTACAAAACATCTTCAGAT
TCCATGTGCAGTACTTATGGGTGCAAATCTCGCCAATGAAGTCGCTGAAGAGAAATTCTG
TGAAACCACAATAGGTGTCAAGGACAAGAAAATGGCACCAATTCTTCGTGATCTTTTCCA
AACACCGAATTTCCGTGTTGTAGTCAGTGACGATGTCGATGCAGTTGAAATTTGTGGTGC
ACTGAAAAACATTGTCGCCTGTGGCGCTGGATTCACTGATGGCCTTGGCCTTGGTGACAA
TACTAAAGCAGCTGTCATTCGTTTGGGTCTTATGGAAATGATCAAGTTTGTTGATGTTTT
CTATCCAGGTAGCAAACTTTCAACATTCTTTGAATCATGCGGTGTTGCTGATTTAATCAC
AACATGCTATGGTGGTCGCAATCGTAAATGCAGTGAGGCCTTTGTTAAGACTGGCAAAAG
CATTGTTGAATTAGAAAAAGAAATGTTAAATGGTCAGAAATTACAGGGTCCAATTACAGC
AGCTGAAGTCAACCATATGTTGAAAACTAGAAATATGGAAGACAAATTCCCACTTTTCAC
AGCTATTCATAAAATTTGCGTTGGAGAAATTAAACCAGCTCAAATGATTGACTGCATTAG
AAACCATCCAGAACACATGGATTGTAGCGATGGCTTTGCAAAGCTTTAAATTTGTTTCAC
AACATCCACCTATTCAAAACTGAAAAAAATCCAAATCAAAAACATTCATCAAAATAATCA
AGACATAAAAGATTGAAAAATCCAAAGTCCTTAAATTTATAGAATGAAAAAAAATTAATA
ATTTTTATAAATGTTTGCATTTATATTCATTATTCATAAAAAGTGTCAACAAATAATTAC
GTTCTTTTTAATATTTTTTTTGATTTATTAATTTTAACAAAAAAAATGAACTTTTTATTC
TGCGAAGTTTACAATAACTCATTTCAAGAAATTTCTTAGGGGTTAAATGTAGTGCAAGGA
TTAATTAACTTCACTGAAATTTTTCAGGTTAATAATTGTTGTAAACTTACCAGAGAATCA
TTTTTACTAGTCTATTATTGGAAAAATTCAGAAAAAAACATTTAAAGAATTCAAAATACA
TAACAATTATAAGTAAAATTTTTGAGGTATTTTTTTTTAAATTATTAAATATGATTCAAA
AACATTCTCTGTTTAAAGTTCTTCCACAAAAGAAGGAATTATTAATTCTTTCTAAAAGAA
ATGTTGATACTTTTTATGAATAATAAATTTTATTTTTTTACTAATCATAGAACTTAAACA
TGGATTTTGATATTAGACAAAAAATTATCATAAATTAAGGTACAATGTGTCATATTATCA
TTACATAATTTTTAAAAAAATTTACACAAAAATTGGATATAAAAATTTTTTATTGGAAAA
TGAAAAATAAAACTAATTGGTATA

>g15558.t8 Gene=g15558 Length=331
MQRIFRNRVTMYVFEEMIEGKKLTEIINTTHENVKYLPGHKLPENIVAVPDVVEAAKDAD
ILIFVIPHQFIKGLGAQLVGKIRPTAIGLSLIKGFDIAEGGGIELISKIITKHLQIPCAV
LMGANLANEVAEEKFCETTIGVKDKKMAPILRDLFQTPNFRVVVSDDVDAVEICGALKNI
VACGAGFTDGLGLGDNTKAAVIRLGLMEMIKFVDVFYPGSKLSTFFESCGVADLITTCYG
GRNRKCSEAFVKTGKSIVELEKEMLNGQKLQGPITAAEVNHMLKTRNMEDKFPLFTAIHK
ICVGEIKPAQMIDCIRNHPEHMDCSDGFAKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g15558.t8 Gene3D G3DSA:3.40.50.720 - 1 165 4.5E-65
13 g15558.t8 Gene3D G3DSA:1.10.1040.10 - 167 322 3.5E-69
3 g15558.t8 PANTHER PTHR11728:SF8 GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)]-RELATED 4 322 7.0E-148
4 g15558.t8 PANTHER PTHR11728 GLYCEROL-3-PHOSPHATE DEHYDROGENASE 4 322 7.0E-148
14 g15558.t8 PIRSF PIRSF000114 Glycerol-3-P_dh 1 323 6.6E-85
6 g15558.t8 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 43 70 6.9E-70
8 g15558.t8 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 120 140 6.9E-70
9 g15558.t8 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 160 184 6.9E-70
5 g15558.t8 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 185 209 6.9E-70
7 g15558.t8 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 227 244 6.9E-70
1 g15558.t8 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 147 3.2E-41
2 g15558.t8 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 167 312 2.1E-46
15 g15558.t8 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 175 196 -
10 g15558.t8 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 7 167 8.54E-33
11 g15558.t8 SUPERFAMILY SSF48179 6-phosphogluconate dehydrogenase C-terminal domain-like 166 322 1.45E-47
16 g15558.t8 TIGRFAM TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+)) 3 314 1.5E-141

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0046168 glycerol-3-phosphate catabolic process BP
GO:0051287 NAD binding MF
GO:0055114 NA NA
GO:0042803 protein homodimerization activity MF
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity MF
GO:0006072 glycerol-3-phosphate metabolic process BP
GO:0009331 glycerol-3-phosphate dehydrogenase complex CC
GO:0005975 carbohydrate metabolic process BP
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed