General information for g15576.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g15576 is located on chr_4: 5909392..5912525 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15576 | g15576.t1 | isoform | g15576.t1 | 5909392 | 5912525 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon1 | 5909392 | 5909838 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS1 | 5909392 | 5909838 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon2 | 5910758 | 5910892 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS2 | 5910758 | 5910892 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon3 | 5910953 | 5911073 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS3 | 5910953 | 5911073 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon4 | 5911170 | 5911315 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS4 | 5911170 | 5911315 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon5 | 5911489 | 5911651 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS5 | 5911489 | 5911651 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon6 | 5911707 | 5911839 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS6 | 5911707 | 5911839 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon7 | 5912089 | 5912346 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS7 | 5912089 | 5912346 |
| chr_4 | g15576 | g15576.t1 | exon | g15576.t1.exon8 | 5912420 | 5912525 |
| chr_4 | g15576 | g15576.t1 | cds | g15576.t1.CDS8 | 5912420 | 5912525 |
| chr_4 | g15576 | g15576.t1 | TSS | g15576.t1 | NA | NA |
| chr_4 | g15576 | g15576.t1 | TTS | g15576.t1 | NA | NA |
Sequences
>g15576.t1 Gene=g15576 Length=1509
ATGACAAACTTACCTTCAATTGCTGATTTTTATGCAAATAAGTCAATCTTCGTGACAGGT
GGAACGGGATTTATTGGAAAAATGATAGTAGAAAAACTATTGAGATCATGTAAGGACATT
AACACAATTTATCTTTTGGCTCGACCAAAAAAAGATAAGTCATCAGCTGATCGTCTTCAA
GAAATGCTCAACTCACCACTCTTTGACAAAATACGTGAGAAAAATCCAGAAGCGTTGAAT
AAAATTGTTCTAGTCAATGGAGATGTTGCAATGGAAAATTTAGGCCTATCAGAAACTGAT
CAGAAAAAGCTTTGTGATAATGTTAACGTTATAATTCATTCAGCTGCAACAATTAATTTT
AATGAGCCATTAAAAGTTGCAATTGCTACAAATTTACAATCTGTAAGAGAGTTGATAAAA
TTAGCAAGAAAAGTCGAAAATTTAAATGTATTAGTTCACGTTTCAACAGCATACACAAAA
TGGTACGATTTTGATGTTAAAGAAATTTTTCATAAACCAAATAATGATCCCAATGAGGTG
ATTGAAATGTGTAAAACTTTATCAGATGAAGAAATAAATAAGAGAACAAAATCACTTTTG
GGAAAACATGTTAATACTTACACTTACTCAAAATCTTTGGCTGAATATCTTGTTAGTGTT
GAAGGTAAAGGTTTACCTATTGCAATTATTAGACCATCAGCTGTCCTTTCAAGCGTAAAA
GAACCATTTCCAGGATGGATTGATAATTGGGCTGGTCACACACTTTACGTTTACATGATG
GCCAGAGGTCTTTTAAGAGTTTTTCACATGAATGGAGATTATCTTTGTGATTGTATTCCA
GCTGATCATACAGTGAATATAACAATTGCAGCAGGATGGAAAGTTGGAACAGACAAATCT
ACCAAAAACAAAGAACCAGAAATTTATCAAATTGCAACAGGATCAGAAAATCCTATAAAA
TGGAAGGAAATGTTTGACCCACTTCAATATTATGCTAGAAATTATCCTTTAACTGATGTA
CTTTGGTATCCAACATACAAATATCGAAAATCAGAAAAAGTTGCAAGATTTGAAACTTTT
GTTACACAATTAATTCCTGCTTATATTGGTGATTTTGCAATGAAAATTACTGGTAGAAAA
CCAAGATTAGTAAAAACACAAAAATTCATTGAACGAAATTACAATTCAGTAAGATTTGTA
GTAAATGAGCCAATTGTCTTTAGAACAGAAAATTATCACAAACTTGCTGCTTCAATGAAT
GAAAATGACTTGAAAGAATTTGATTTTGATTTGAGAAAAATTGATTGGAAAAAATATATT
GAAAATTACTATTTTGGAGCACGAAAATATTTGTGGAAGCAAAAGGATGGAAATTATCCT
GTTTTGAAAAAGAAAGTTGTTAGGTTAAAATACGCAAATTACGTTTTTATGGGAACATCA
ATTGCAGCTTCACTGTATTTTCTAAATTCAGCTAAAAATCTTTTATTCAAGAAAAATCAA
GACTGTTAA
>g15576.t1 Gene=g15576 Length=502
MTNLPSIADFYANKSIFVTGGTGFIGKMIVEKLLRSCKDINTIYLLARPKKDKSSADRLQ
EMLNSPLFDKIREKNPEALNKIVLVNGDVAMENLGLSETDQKKLCDNVNVIIHSAATINF
NEPLKVAIATNLQSVRELIKLARKVENLNVLVHVSTAYTKWYDFDVKEIFHKPNNDPNEV
IEMCKTLSDEEINKRTKSLLGKHVNTYTYSKSLAEYLVSVEGKGLPIAIIRPSAVLSSVK
EPFPGWIDNWAGHTLYVYMMARGLLRVFHMNGDYLCDCIPADHTVNITIAAGWKVGTDKS
TKNKEPEIYQIATGSENPIKWKEMFDPLQYYARNYPLTDVLWYPTYKYRKSEKVARFETF
VTQLIPAYIGDFAMKITGRKPRLVKTQKFIERNYNSVRFVVNEPIVFRTENYHKLAASMN
ENDLKEFDFDLRKIDWKKYIENYYFGARKYLWKQKDGNYPVLKKKVVRLKYANYVFMGTS
IAASLYFLNSAKNLLFKKNQDC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g15576.t1 | CDD | cd05236 | FAR-N_SDR_e | 14 | 336 | 7.38497E-126 |
| 11 | g15576.t1 | CDD | cd09071 | FAR_C | 363 | 451 | 1.92771E-26 |
| 6 | g15576.t1 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 374 | 4.7E-77 |
| 3 | g15576.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 6 | 489 | 8.0E-148 |
| 4 | g15576.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 6 | 489 | 8.0E-148 |
| 1 | g15576.t1 | Pfam | PF07993 | Male sterility protein | 18 | 287 | 6.9E-75 |
| 2 | g15576.t1 | Pfam | PF03015 | Male sterility protein | 363 | 453 | 5.1E-25 |
| 8 | g15576.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 470 | - |
| 9 | g15576.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 471 | 488 | - |
| 7 | g15576.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 489 | 502 | - |
| 5 | g15576.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 6 | 294 | 1.12E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed