General information for g1568.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.
Parent gene
- The parent gene g1568 is located on chr_3: 11910670..11912880 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1568 | g1568.t1 | isoform | g1568.t1 | 11910670 | 11912880 |
| chr_3 | g1568 | g1568.t1 | exon | g1568.t1.exon1 | 11910670 | 11910863 |
| chr_3 | g1568 | g1568.t1 | cds | g1568.t1.CDS1 | 11910670 | 11910863 |
| chr_3 | g1568 | g1568.t1 | exon | g1568.t1.exon2 | 11910918 | 11911200 |
| chr_3 | g1568 | g1568.t1 | cds | g1568.t1.CDS2 | 11910918 | 11911200 |
| chr_3 | g1568 | g1568.t1 | exon | g1568.t1.exon3 | 11911329 | 11911358 |
| chr_3 | g1568 | g1568.t1 | cds | g1568.t1.CDS3 | 11911329 | 11911358 |
| chr_3 | g1568 | g1568.t1 | exon | g1568.t1.exon4 | 11911422 | 11912002 |
| chr_3 | g1568 | g1568.t1 | cds | g1568.t1.CDS4 | 11911422 | 11912002 |
| chr_3 | g1568 | g1568.t1 | exon | g1568.t1.exon5 | 11912062 | 11912697 |
| chr_3 | g1568 | g1568.t1 | cds | g1568.t1.CDS5 | 11912062 | 11912697 |
| chr_3 | g1568 | g1568.t1 | exon | g1568.t1.exon6 | 11912759 | 11912787 |
| chr_3 | g1568 | g1568.t1 | cds | g1568.t1.CDS6 | 11912759 | 11912787 |
| chr_3 | g1568 | g1568.t1 | exon | g1568.t1.exon7 | 11912855 | 11912880 |
| chr_3 | g1568 | g1568.t1 | cds | g1568.t1.CDS7 | 11912855 | 11912880 |
| chr_3 | g1568 | g1568.t1 | TSS | g1568.t1 | NA | NA |
| chr_3 | g1568 | g1568.t1 | TTS | g1568.t1 | NA | NA |
Sequences
>g1568.t1 Gene=g1568 Length=1779
ATGAAAAGCTCAATACCAAAACGGAGACAAGAACTAATAAATTGGAGTGGTTGGGGGTAT
CGAGATTCCAAATTTTATGTTAAAAACAGAAAACTTGTTTTCTCTGGCTCACGTTATTCA
ATCAAAAATGATATTGCGCTAACACGTTTTGAGCGATGGAATAAGAAAGTTTTTAACCTT
ACGCCAAATGATCCTTTTGAAAAACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTG
AATGAAACATTTTATAATACGATAAAAGATATAAAAATGGATTATTCAGTAGATGGTGAA
GATCGTTTTATTCGCTGTCATGGTCAAACTATCCACGATATTTATAACATAAGAACTAAC
AATTTCAAACGCATTCCCGATTTGATTCTTTGGCCAAAATGTCATGATGATGTTGTAAAA
ATTGTAAAGTTAGCCGATGAAAATAATGTCATGTTAATTCCGTTTGGTGGCGGAACAAGT
GTTAGTGGTTCTATCACTTGTCCACAAGATGAAGAACGTTCAATTGTCGTCATTGATACT
TCACAAATGAATCGACTTTTATGGCTTGACAAAGAGAATCTTGTAGCTTGCTTTGAAAGT
GGTATTGTTGGACAGGATTTAGAAAGAACATTAAAAGATGAAGGCCTAACAATGGGACAT
GAACCAGATAGTATTGAATTTTCAACTCTTGGTGGATGGATTGCAACTAGAGCATCGGGC
ATGAAAAAGAATGTCTATGGGAATATTGAAGACATTGTTATACGAGTGAAAATGGTGACA
TGCAAAGGTGTACTTGAACGAAATATTTCAGCTCCTCGTGTGAGTTGTGGACCTGATTTC
AATCAATTAATACTTGGTAGTGAAGGAACACTTGGTGTTGTCACTGAAGTTATAGTCAAA
GTTCGACCTTTGCCTGCTGTTAAAAAGTATGGCTCAATTGTATTTCCTAATTTTGAAATG
GGTGTTCGTTGTCTACGTGAAATCGCTAAGAAGCGATGTCAACCAGCTTCAATAAGATTA
ATGGACAATGAACAATTTCATTTTGGACAATCACTTAAAGTCGATAATGGATTAGTTTCA
AAATTTGTCGATAGTTTGAAAATGTTTTTATTGAGTAAAGTCAAAGGATATGATTTGATG
AAAATTTCTGTTGCAACATTGCTTTTTGAAGGAGATAAAGAAGAAGTTGAAAAACAAGAA
AAATTAATTTACGAAATTGCTGACCGATATTCTGGTTTAAAAGCTGGTGAAACAAATGGA
CAGAAAGGCTATCTTTTGACTTTTGTTATTGCATACATTAGGGATCTTGGTGTTAATTTT
GGAATGATAGCTGAATCTTTTGAAACTTCAGTAGCATGGAGTAAATGTGAATTATTATAC
AAGAATGTAATAAACTGTGTACATGCACAATGCAAAAAACACGGAATTGTTTACTACTTA
ATCAGTTGTCGAATTACACAAATTTACGATGTTGGTGCATGCGTTTACTTCTACTTTGGT
TTTCGATGGAACTCTGATTGCATTGATCCTATTGGTCTGTATGAAGAAATTGAAAATAAA
GCGAGAGATGAAATTTTAGCTTCAGGTGGTAGCATTAGTCATCATCATGGGATTGGCAAA
ATACGTGCTAAATGGTATGAGCAAAGTGTTTCGACCATAGGTGTTAATCTTTATAAAACA
ATAAAGCAAGAACTTGATCCTAAAAATATATTTGCACTTAAAAATCTTCATAAGGAAGAA
GATAAAATAAATTTTAAAAAGTTAAAAGCAAAATTTTAA
>g1568.t1 Gene=g1568 Length=592
MKSSIPKRRQELINWSGWGYRDSKFYVKNRKLVFSGSRYSIKNDIALTRFERWNKKVFNL
TPNDPFEKPKLPTTFPEPILNETFYNTIKDIKMDYSVDGEDRFIRCHGQTIHDIYNIRTN
NFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTSVSGSITCPQDEERSIVVIDT
SQMNRLLWLDKENLVACFESGIVGQDLERTLKDEGLTMGHEPDSIEFSTLGGWIATRASG
MKKNVYGNIEDIVIRVKMVTCKGVLERNISAPRVSCGPDFNQLILGSEGTLGVVTEVIVK
VRPLPAVKKYGSIVFPNFEMGVRCLREIAKKRCQPASIRLMDNEQFHFGQSLKVDNGLVS
KFVDSLKMFLLSKVKGYDLMKISVATLLFEGDKEEVEKQEKLIYEIADRYSGLKAGETNG
QKGYLLTFVIAYIRDLGVNFGMIAESFETSVAWSKCELLYKNVINCVHAQCKKHGIVYYL
ISCRITQIYDVGACVYFYFGFRWNSDCIDPIGLYEEIENKARDEILASGGSISHHHGIGK
IRAKWYEQSVSTIGVNLYKTIKQELDPKNIFALKNLHKEEDKINFKKLKAKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g1568.t1 | Gene3D | G3DSA:3.30.43.10 | - | 13 | 183 | 0.000 |
| 10 | g1568.t1 | Gene3D | G3DSA:3.30.160.650 | - | 22 | 62 | 0.000 |
| 7 | g1568.t1 | Gene3D | G3DSA:3.30.465.10 | - | 184 | 304 | 0.000 |
| 6 | g1568.t1 | Gene3D | G3DSA:3.30.70.3450 | - | 305 | 428 | 0.000 |
| 8 | g1568.t1 | Gene3D | G3DSA:3.30.300.330 | - | 429 | 536 | 0.000 |
| 11 | g1568.t1 | Gene3D | G3DSA:1.10.45.10 | - | 537 | 577 | 0.000 |
| 3 | g1568.t1 | PANTHER | PTHR46568 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 3 | 576 | 0.000 |
| 1 | g1568.t1 | Pfam | PF01565 | FAD binding domain | 126 | 265 | 0.000 |
| 2 | g1568.t1 | Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 304 | 572 | 0.000 |
| 12 | g1568.t1 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 122 | 304 | 24.823 |
| 5 | g1568.t1 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 77 | 305 | 0.000 |
| 4 | g1568.t1 | SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 308 | 572 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008609 | alkylglycerone-phosphate synthase activity | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
| GO:0008610 | lipid biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00803 (alkyldihydroxyacetonephosphate synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed