General information for g15692.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acyl-CoA reductase 1.
Parent gene
- The parent gene g15692 is located on chr_4: 6413215..6415306 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15692 | g15692.t1 | TTS | g15692.t1 | 6412679 | 6412679 |
| chr_4 | g15692 | g15692.t1 | isoform | g15692.t1 | 6413215 | 6415306 |
| chr_4 | g15692 | g15692.t1 | exon | g15692.t1.exon1 | 6413215 | 6413611 |
| chr_4 | g15692 | g15692.t1 | cds | g15692.t1.CDS1 | 6413215 | 6413611 |
| chr_4 | g15692 | g15692.t1 | exon | g15692.t1.exon2 | 6413670 | 6414039 |
| chr_4 | g15692 | g15692.t1 | cds | g15692.t1.CDS2 | 6413670 | 6414039 |
| chr_4 | g15692 | g15692.t1 | exon | g15692.t1.exon3 | 6414103 | 6414147 |
| chr_4 | g15692 | g15692.t1 | cds | g15692.t1.CDS3 | 6414103 | 6414147 |
| chr_4 | g15692 | g15692.t1 | exon | g15692.t1.exon4 | 6414304 | 6414425 |
| chr_4 | g15692 | g15692.t1 | cds | g15692.t1.CDS4 | 6414304 | 6414425 |
| chr_4 | g15692 | g15692.t1 | exon | g15692.t1.exon5 | 6414711 | 6415306 |
| chr_4 | g15692 | g15692.t1 | cds | g15692.t1.CDS5 | 6414711 | 6415306 |
| chr_4 | g15692 | g15692.t1 | TSS | g15692.t1 | NA | NA |
Sequences
>g15692.t1 Gene=g15692 Length=1530
ATGGAAGTCAGTGCAGAAAATTCAATTCACAAGTTTTTTGAAAATTCTGAAATATTTATA
AGTGGCGGAAGTGGTTTTGTCGGTCGTGTATTGATTGAAAAATTATTGAGAACTTGCAAA
GGAGTGAAAAAAATTTATTTGCTTTTAAGATCAAAGAAAAATGACACACCATGGGAAAGA
ATTCAAAAATTGACAGATTGCAAACTTTTTGAAAGTTTAAAGGCTTCAGATCCAACAGCT
ATAAATAAAATTCATGTTTTAAAAGGCGATGCAATGGAACTTGAACTTGGCCTTTCAAAA
TCTGACCTTGAAATAGTAAAAAACTGTTCAGTAATTTTTCATTGTGCAGCATCAGTGCGT
TTTGATGATTCACTTAAAGATGCAATTTTACTCAACACTCGTGGAACAAGAGAAATTTGT
AAAATTGCAGAAGAAATGAAAAACTTAAAAGCATTTGTTCATGTTTCAACAAGTTTTATT
GTACCAAAACTTCATGGATCTGATGAAATTTTTTATCCTGCTGATTGTGATTGGCAGAAA
ATGATTCAATTTGCTGAAAATTTTGATTATGATTTGATTAATTGTTTGGAAAAGAAATTA
ACAAAATTTGCACCAAATACGTATACGTTTAGTAAACATTTAGCTGAGCAAGTTTGTGAA
TATTATAAGAAAAGCAAAAATCTTCCAATTGTCATCTATCGACCTTCACTTATAGCAGGC
ACAGAAGTAGAACCTTTTCCAGGATGGCTTGATAATCTTTATGGACCTTTTGCATTTGCA
TTTTCTGGTGCATTAGGAATCAACCATATTTCGCACGTAAAAGGCGATATTGTTCTTGAT
TTCATTCCAGTTGATATTTGTGTCAAAGGAATGTTAATTGCTGCATGGAAAACTTGGAAA
GATAAAAATTCATTAATGCCTATTTATAATGCGAGTAATGTGAAAAAAGCTTCAATTATA
TCAATTTCAAAGTATAAAATTTTAAAAGATTTTCCACCAAAAAATGCTATCATGTATCAT
GATCATCATCATACACAATGTCGATTTATTGGATGGATTATAAGAATTATTGATCAAATT
ATTCCTGCATTAATTATTGATGGCTTACTAAAAATTTCTGGAAAGAAAACAAAAATGATG
AGATATCAAAGAATAATTTATGATGCACTCAACAATATCACAATTTTCACAAAAGAAAAT
TTCCATTTTACCAATTTCAAATTTCTTGATTTAAATCTTGAAGTGCCAACAAATGAGAAA
AAAGATTTTTTCATTAACGAACTTTATCCACAAATGAATATGAAACAAATGAATGAAATT
TTAAATAATTTACTTGAAATTTTCTTTAATCAAAAACCAGAACATAAAGAAATGGCAAAA
AAGAGATATTTTTATGTCATTTTATTTTCACGAATGTATCAAATTTTTGCTTATTCTGGA
TTTTTTTATTTGGTTTATAAATTACTTGACAAAAGTTTAACTCAAATTGATTTTAGTGAT
ATGATTTTTAATGAAAATTTTGTGATTTAA
>g15692.t1 Gene=g15692 Length=509
MEVSAENSIHKFFENSEIFISGGSGFVGRVLIEKLLRTCKGVKKIYLLLRSKKNDTPWER
IQKLTDCKLFESLKASDPTAINKIHVLKGDAMELELGLSKSDLEIVKNCSVIFHCAASVR
FDDSLKDAILLNTRGTREICKIAEEMKNLKAFVHVSTSFIVPKLHGSDEIFYPADCDWQK
MIQFAENFDYDLINCLEKKLTKFAPNTYTFSKHLAEQVCEYYKKSKNLPIVIYRPSLIAG
TEVEPFPGWLDNLYGPFAFAFSGALGINHISHVKGDIVLDFIPVDICVKGMLIAAWKTWK
DKNSLMPIYNASNVKKASIISISKYKILKDFPPKNAIMYHDHHHTQCRFIGWIIRIIDQI
IPALIIDGLLKISGKKTKMMRYQRIIYDALNNITIFTKENFHFTNFKFLDLNLEVPTNEK
KDFFINELYPQMNMKQMNEILNNLLEIFFNQKPEHKEMAKKRYFYVILFSRMYQIFAYSG
FFYLVYKLLDKSLTQIDFSDMIFNENFVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g15692.t1 | CDD | cd05236 | FAR-N_SDR_e | 18 | 312 | 5.39193E-99 |
| 7 | g15692.t1 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 337 | 6.1E-67 |
| 2 | g15692.t1 | PANTHER | PTHR11011:SF24 | FATTY ACYL-COA REDUCTASE | 7 | 488 | 3.1E-134 |
| 3 | g15692.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 7 | 488 | 3.1E-134 |
| 1 | g15692.t1 | Pfam | PF07993 | Male sterility protein | 20 | 290 | 1.8E-65 |
| 10 | g15692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 348 | - |
| 11 | g15692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 349 | 370 | - |
| 8 | g15692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 371 | 462 | - |
| 12 | g15692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 463 | 486 | - |
| 9 | g15692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 487 | 509 | - |
| 6 | g15692.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 9 | 303 | 3.76E-33 |
| 4 | g15692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 352 | 374 | - |
| 5 | g15692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 464 | 486 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed